Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG543_RS08150 Genome accession   NZ_CP108592
Coordinates   1855522..1857255 (+) Length   577 a.a.
NCBI ID   WP_398388769.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01178     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1850522..1862255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG543_RS08120 (OG543_08125) - 1851996..1852589 (+) 594 WP_405635055.1 hypothetical protein -
  OG543_RS08140 (OG543_08145) - 1853408..1853713 (+) 306 WP_073765817.1 hypothetical protein -
  OG543_RS08145 (OG543_08150) - 1853797..1855248 (+) 1452 WP_073765819.1 FGGY family carbohydrate kinase -
  OG543_RS08150 (OG543_08155) rcrP 1855522..1857255 (+) 1734 WP_398388769.1 ABC transporter ATP-binding protein Regulator
  OG543_RS08155 (OG543_08160) rcrQ 1857255..1859183 (+) 1929 WP_398388768.1 ABC transporter ATP-binding protein Regulator
  OG543_RS08160 (OG543_08165) rpoS 1859199..1860290 (-) 1092 WP_405635058.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62468.55 Da        Isoelectric Point: 5.1561

>NTDB_id=663629 OG543_RS08150 WP_398388769.1 1855522..1857255(+) (rcrP) [Streptomyces sp. NBC_01178]
MLIQLLRVHLGPYKKPIALLVLLQLLQTCATLYLPSLNADIIDNGVVEGDTGYILEFGGLMIAVSVLQIVCNVGAVYYGA
RTASALGRDVRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQIQMLVLLAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGVSVGLIVKRMGPLFRTMQERLDGVNRVLREQITGNRVIRAFVRDKYEEERFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDGGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERVEEVLRTETSVVP
PLAPVTELRRHGHLEVRGAEFRYPGAEEPVLRNVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTGGEVLVDGEDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRLVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=663629 OG543_RS08150 WP_398388769.1 1855522..1857255(+) (rcrP) [Streptomyces sp. NBC_01178]
GTGCTCATACAACTCCTGCGGGTCCATCTGGGCCCGTACAAGAAACCCATCGCGCTGCTGGTGCTCCTCCAGCTGCTGCA
GACCTGCGCCACCCTGTATCTGCCCAGCCTGAACGCCGACATCATCGACAACGGTGTCGTCGAGGGCGACACCGGCTACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGCGTCCTCCAGATCGTCTGCAACGTGGGGGCCGTGTACTACGGCGCC
CGCACGGCCTCCGCGCTCGGCCGCGACGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGTGAGCTGGG
GCGGTTCGGGGCGCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGATCCAGATGCTGGTGCTGCTGGCGTTCA
CCCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGGCAGGACGTGCCGCTCTCCGCGGTG
CTGCTGGCGGTGGTGCCGGTGCTCGGCGTCTCGGTGGGGCTGATCGTGAAGCGGATGGGCCCCCTGTTCCGCACCATGCA
GGAGCGGCTGGACGGCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGGGCCTTCGTCCGGGACA
AGTACGAGGAGGAGCGGTTCCGGGGTGCGAACACCGAGCTGACCGACGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGGGCGCACCGCATCGACGGCGG
CGGAATGCAGATCGGCGCGCTGACCGCGTTCCTCGCCTACCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCGTCGAGGAGGTCCTGAGGACCGAGACGAGCGTCGTACCG
CCGCTCGCGCCCGTCACCGAACTGCGGCGCCACGGTCATCTGGAGGTGCGCGGGGCGGAGTTCCGCTACCCGGGCGCGGA
GGAGCCGGTGCTGCGGAACGTGGACCTGGTGGCCCGGCCCGGGGAGACGACCGCGGTCATCGGGTCGACGGGCAGCGGGA
AGTCCACGCTGCTCGGGCTCGTGCCCCGGCTGTTCGACGTGACGGGCGGCGAGGTGCTGGTCGACGGCGAGGACGTGCGG
ACGCTCGATCCGGTGCTGCTGGCGAAGACGGTGTCCCTGGTGCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTGGCGAC
GAACCTGCGGTACGGGAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TCGAGGCGCTGGAGCACGGGCTCGACGCTCCGATCGCGCAGGGCGGCACCAACGTGTCCGGCGGCCAGCGGCAGCGGCTC
GCGATCGCCCGCACGCTGGTGCAGCGGCCGGAGATCTACCTGTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTGGGGCGGGAGACGGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGCATCCTGGTGCTGGACGAGGGCCGGCTCGTGGGGTCCGGAACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.108

100

0.395