Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG708_RS20705 Genome accession   NZ_CP108591
Coordinates   4486733..4488130 (-) Length   465 a.a.
NCBI ID   WP_405562103.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01180     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4481733..4493130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG708_RS20680 (OG708_20635) - 4482062..4482613 (-) 552 WP_266854649.1 SigE family RNA polymerase sigma factor -
  OG708_RS20685 (OG708_20640) - 4482789..4483817 (-) 1029 WP_405562101.1 A/G-specific adenine glycosylase -
  OG708_RS20690 (OG708_20645) - 4483834..4484442 (-) 609 WP_405562102.1 phosphatase PAP2 family protein -
  OG708_RS20695 (OG708_20650) - 4484626..4485462 (+) 837 WP_405565522.1 hypothetical protein -
  OG708_RS20700 (OG708_20655) disA 4485525..4486676 (-) 1152 WP_327296059.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG708_RS20705 (OG708_20660) radA/sms 4486733..4488130 (-) 1398 WP_405562103.1 DNA repair protein RadA Machinery gene
  OG708_RS20710 (OG708_20665) - 4488291..4489991 (+) 1701 WP_327296057.1 BACON domain-containing protein -
  OG708_RS20715 (OG708_20670) - 4490025..4490828 (-) 804 WP_327296056.1 hypothetical protein -
  OG708_RS20720 (OG708_20675) - 4490906..4491838 (+) 933 WP_405562104.1 Ppx/GppA family phosphatase -
  OG708_RS20725 (OG708_20680) - 4491914..4492732 (+) 819 WP_327296054.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 48759.77 Da        Isoelectric Point: 7.7378

>NTDB_id=663583 OG708_RS20705 WP_405562103.1 4486733..4488130(-) (radA/sms) [Streptomyces sp. NBC_01180]
MATRAKTRERPSYRCTECGYTTAKWLGRCPECQTWGTVEEQGGGPAVRTTAAGPVSSAAVPIGQVDSRTATARSTGVTEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGSDHRTLYVTAEESASQVRLRADRIHAINDHLYLAAETDLAAVL
GHLDAVKPSLLVLDSVQTVASPELDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVIEVADMGDALRALPRRSRARASQDE

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=663583 OG708_RS20705 WP_405562103.1 4486733..4488130(-) (radA/sms) [Streptomyces sp. NBC_01180]
ATGGCCACCCGTGCGAAGACCAGAGAACGGCCGTCCTACCGCTGCACCGAGTGCGGGTACACGACGGCCAAGTGGCTGGG
CCGCTGCCCCGAGTGCCAGACGTGGGGGACGGTCGAGGAGCAGGGCGGCGGGCCCGCCGTGCGGACGACCGCGGCCGGTC
CGGTCAGCAGCGCCGCCGTCCCCATCGGCCAGGTCGACAGCCGGACGGCGACAGCGCGTTCGACCGGGGTCACCGAGCTG
GACCGGGTACTCGGCGGCGGTCTGGTGCCGGGGGCCGTGGTGCTGCTCGCCGGAGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTCGACGTGGCGGCGAAGGCGGCGGGCTCCGACCACCGCACGCTCTACGTGACGGCCGAGGAGTCCGCGAGCCAGG
TCAGGCTGCGCGCCGACCGGATCCACGCGATCAACGACCACCTCTATCTGGCCGCCGAGACGGACCTGGCGGCGGTGCTC
GGCCATCTCGACGCTGTGAAGCCGTCCCTGCTGGTCCTGGACTCCGTACAGACGGTGGCCTCACCCGAACTGGACGGTGC
GCCGGGCGGTATGGCGCAGGTGCGCGAGGTGGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGGCCACGCTGC
TCGTCGGGCACGTCACGAAGGACGGCGCCATCGCCGGGCCCCGGCTCCTTGAGCACCTGGTGGACGTCGTGCTGTCCTTC
GAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCGTCAAGAACAGATACGGGGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGATCCGAGCGGGCTGTTCCTGACGCGCCGTGACGAACCGGTGCCCG
GGACGTGTCTGACGGTCACCCTGGAGGGCAAGCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCACCCCGGCGCACCACCTCCGGCCTGGAGACCTCCCGGGTGTCGATGATGCTCGCCGTACTCGAACAGCGCGGCAG
GATCAGCGCGCTCGGCAAGCGAGACATCTACACGGCGACGGTCGGCGGCGTGAAGCTCACCGAACCGGCCGCCGACCTGG
CCGTCGCGCTCGCCCTGGCCTCCGCCGCCAGCGACGTCCCGCTCCCGAAGAACCTGGTGGCGATCGGTGAAGTGGGTCTC
GCCGGCGAGGTCAGGAGGGTCACCGGCGTCCAGCGCAGGCTCGCCGAGGCGCACCGTCTCGGCTTCACCCACGCCCTCGT
ACCGACCGACCCGGGGAAGGTCCCCGCCGGGATGAAGGTCATCGAAGTGGCGGACATGGGGGACGCGCTGCGGGCCCTTC
CGCGCCGTTCAAGGGCCCGCGCGTCCCAGGACGAGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(80-222)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.077

97.849

0.422
  radA Streptococcus mitis SK321

41.85

97.634

0.409
  radA Streptococcus mitis NCTC 12261

41.85

97.634

0.409
  radA Streptococcus pneumoniae TIGR4

41.907

96.989

0.406
  radA Streptococcus pneumoniae R6

41.907

96.989

0.406
  radA Streptococcus pneumoniae Rx1

41.907

96.989

0.406
  radA Streptococcus pneumoniae D39

41.907

96.989

0.406