Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilV   Type   Machinery gene
Locus tag   AS4_RS01745 Genome accession   NZ_AP014630
Coordinates   370632..371153 (+) Length   173 a.a.
NCBI ID   WP_034617453.1    Uniprot ID   A0AAX3PJS5
Organism   Acinetobacter guillouiae strain NBRC 110550     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 365632..376153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS4_RS01725 (AS4_03350) rpoZ 367876..368157 (-) 282 WP_004718302.1 DNA-directed RNA polymerase subunit omega -
  AS4_RS01730 (AS4_03360) gmk 368279..368899 (-) 621 WP_034617459.1 guanylate kinase -
  AS4_RS01735 (AS4_03370) ispH 369034..369984 (+) 951 WP_096732771.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AS4_RS01740 (AS4_03380) - 370126..370635 (+) 510 WP_167468922.1 Tfp pilus assembly protein FimT/FimU -
  AS4_RS01745 (AS4_03390) pilV 370632..371153 (+) 522 WP_034617453.1 type IV pilus modification protein PilV Machinery gene
  AS4_RS01750 (AS4_03400) pilW 371162..372073 (+) 912 WP_227548111.1 PilW family protein Machinery gene
  AS4_RS01755 (AS4_03410) - 372057..372836 (+) 780 WP_096732777.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence


Protein


Download         Length: 173 a.a.        Molecular weight: 18311.21 Da        Isoelectric Point: 8.4661

>NTDB_id=66357 AS4_RS01745 WP_034617453.1 370632..371153(+) (pilV) [Acinetobacter guillouiae strain NBRC 110550]
MKNKKNQLGVGLVEVLVALVLLAIGVLGFTALQLRAVDATSEALTRSQATLILRGLTESIRANPNGQSSYPAAVKGYIGV
GEKSPKKKCFNATCTPAEMADYDSYLAADAASRIGISITMTDCPGVGSTIKRQCLFAAWDETASKLKASDYSACMSSTGT
YVFTAKCLMMEAY

Nucleotide


Download         Length: 522 bp        

>NTDB_id=66357 AS4_RS01745 WP_034617453.1 370632..371153(+) (pilV) [Acinetobacter guillouiae strain NBRC 110550]
ATGAAGAATAAGAAGAATCAATTGGGTGTGGGGCTCGTTGAAGTTTTAGTTGCCCTGGTTTTGCTTGCGATCGGGGTTTT
GGGATTTACTGCTTTACAGTTAAGGGCTGTAGATGCGACTAGTGAAGCACTTACAAGATCTCAAGCAACACTAATTCTGA
GAGGCTTAACAGAAAGTATTCGTGCTAATCCTAATGGTCAATCTAGTTATCCTGCTGCTGTAAAAGGGTATATTGGTGTG
GGAGAAAAGTCTCCGAAAAAAAAATGTTTTAATGCCACATGTACACCAGCAGAAATGGCTGATTATGATTCATATTTGGC
TGCCGATGCAGCATCAAGAATCGGGATTAGTATTACAATGACAGATTGCCCAGGGGTAGGCAGTACAATTAAAAGGCAAT
GCTTATTCGCTGCTTGGGATGAAACTGCATCGAAGTTAAAAGCAAGTGATTATAGTGCTTGTATGAGTAGCACAGGAACG
TATGTGTTTACTGCAAAATGCCTAATGATGGAGGCATATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

51.397

100

0.532

  pilV Acinetobacter baylyi ADP1

40.556

100

0.422


Multiple sequence alignment