Detailed information NTG0663471

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LIW09_RS10465
• Genome accession: NZ_CP093311
• Coordinates: 2230368..2231804 (+)
• Length: 478 a.a.
• NCBI ID: WP_256645561.1
• Uniprot ID: -
• Organism: Thermomonas paludicola strain IMCC34681
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2225368..2236804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIW09_RS10450	sucD	2226388..2227263 (-)	876	WP_256645558.1	succinate--CoA ligase subunit alpha	-
LIW09_RS10455	sucC	2227385..2228545 (-)	1161	WP_256645559.1	ADP-forming succinate--CoA ligase subunit beta	-
LIW09_RS10460	-	2228678..2230285 (+)	1608	WP_256645560.1	histidine kinase dimerization/phospho-acceptor domain-containing protein	-
LIW09_RS10465	pilR	2230368..2231804 (+)	1437	WP_256645561.1	sigma-54 dependent transcriptional regulator	Regulator
LIW09_RS10470	-	2231931..2232869 (+)	939	WP_256645562.1	UDP-glucuronic acid decarboxylase family protein	-
LIW09_RS10475	-	2232871..2233785 (+)	915	WP_256645563.1	glycosyltransferase family A protein	-
LIW09_RS10480	pyk	2233993..2235474 (-)	1482	WP_256645564.1	pyruvate kinase	-

Sequence

Protein

• Length: 478 a.a.
• Molecular weight: 51508.96 Da
• Isoelectric Point: 7.0125

>NTDB_id=663471 LIW09_RS10465 WP_256645561.1 2230368..2231804(+) (pilR) [Thermomonas paludicola strain IMCC34681]
MTTASRTAAPSALIVDDERDIRELLVLTLGRMGLKCDTASSLHDARALLKHNQYALCLTDMRLTDGSGIDLVQEISQLHA
HTPVAMITAFGNQEAAVGALKAGAFDFVSKPVDLTVLRGLVQHALNLGAQPQTTGDAAKPDSTPAGAASRLLGQSSAMTE
LRGTLAKVARSQAPVYIAGESGVGKELVARTIHAEGARASAPFVPVNCGAIPAELMESEFFGHRKGSFTGAHADKAGLFQ
AAEGGTLFLDEIAELPMHMQVKLLRAIQEKSVRPVGANVEVPVDVRILSATHKNLAALVDEGRFRHDLYYRINVIELRVP
PLRERRQDLPLLIEAILTRLATAQGRIRPLLHADAMEALAHYTFPGNVRELENILERAFALADDDGIRASDLRLPEARPS
APSQAQVQAHAAASTLDPSQIDPRESASSALPSFIEEIERKAIELALADNRFNKTRTAAQLGITFRALRYKLKKLGID

Nucleotide

• Length: 1437 bp

>NTDB_id=663471 LIW09_RS10465 WP_256645561.1 2230368..2231804(+) (pilR) [Thermomonas paludicola strain IMCC34681]
ATGACTACTGCGTCCCGTACCGCCGCGCCTAGCGCCCTGATCGTCGATGACGAGCGCGACATCCGTGAACTGCTGGTGCT
GACCCTGGGCCGGATGGGGCTGAAGTGCGACACTGCCTCCTCGTTGCACGACGCGCGCGCGCTGCTCAAGCACAACCAAT
ATGCCCTGTGCCTGACCGACATGCGGCTGACCGACGGCTCCGGGATCGATCTGGTCCAGGAAATCTCCCAGCTGCACGCG
CATACCCCGGTGGCGATGATCACCGCCTTCGGCAACCAGGAAGCGGCGGTGGGCGCACTGAAAGCCGGCGCCTTCGATTT
CGTCAGCAAGCCGGTGGACCTGACCGTGCTGCGCGGGCTGGTGCAGCACGCCCTGAACCTGGGCGCGCAACCGCAAACCA
CGGGCGACGCAGCCAAGCCGGACAGCACCCCCGCCGGTGCAGCATCGCGCCTGCTGGGGCAGTCGTCGGCAATGACCGAA
TTGCGCGGTACCCTGGCCAAGGTCGCGCGCAGCCAGGCGCCGGTCTATATCGCCGGCGAGTCCGGGGTCGGCAAGGAACT
GGTCGCACGCACCATTCACGCGGAAGGCGCACGCGCCAGCGCGCCGTTCGTTCCGGTCAACTGCGGCGCGATCCCGGCCG
AGCTGATGGAAAGCGAGTTTTTCGGCCACCGCAAGGGCAGCTTCACCGGCGCCCACGCCGACAAGGCCGGGCTGTTCCAG
GCCGCCGAAGGCGGCACGCTGTTCCTCGACGAAATCGCCGAATTGCCGATGCACATGCAGGTCAAACTGCTGCGCGCGAT
CCAGGAAAAATCGGTGCGCCCGGTGGGTGCCAATGTCGAGGTACCGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGA
ACCTGGCGGCGCTGGTGGACGAGGGCCGCTTCCGGCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCG
CCGCTGCGCGAGCGTCGCCAGGACTTGCCGCTGTTGATCGAAGCCATCCTCACCCGGCTGGCGACCGCGCAAGGGCGAAT
CCGCCCGCTGCTGCACGCCGATGCCATGGAAGCCTTGGCCCACTACACCTTCCCCGGCAACGTGCGCGAGCTGGAGAACA
TCCTGGAACGCGCGTTCGCCCTGGCCGACGACGACGGCATTCGCGCATCCGACCTGCGCCTGCCGGAAGCCCGCCCCAGC
GCCCCCTCGCAAGCACAGGTGCAAGCCCATGCCGCGGCATCCACCCTGGACCCCAGCCAGATCGATCCACGCGAATCCGC
CAGCAGCGCCCTGCCCAGCTTCATCGAAGAAATCGAGCGCAAGGCCATCGAACTGGCACTGGCCGACAATCGCTTCAACA
AGACCCGAACCGCAGCGCAACTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAAAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (435-475)

• Response regulator receiver domain (Response_reg) (13-119)

• Sigma-54 interaction domain (Sigma54_activat) (151-317)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.325	97.908	0.6
pilR	Acinetobacter baumannii strain A118	46.526	99.372	0.462