Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MN210_RS10855 Genome accession   NZ_CP093310
Coordinates   2593156..2593839 (-) Length   227 a.a.
NCBI ID   WP_241878558.1    Uniprot ID   -
Organism   Psychrobacter raelei strain PraFG1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2588156..2598839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN210_RS10835 (MN210_19260) mnmC 2588751..2590970 (+) 2220 WP_338412202.1 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC -
  MN210_RS10840 (MN210_13755) - 2591010..2591816 (-) 807 WP_241878557.1 tRNA threonylcarbamoyladenosine dehydratase -
  MN210_RS10845 (MN210_13760) - 2591924..2592814 (-) 891 WP_338412203.1 TatD family hydrolase -
  MN210_RS10850 (MN210_13765) - 2592804..2593034 (-) 231 WP_041773359.1 hypothetical protein -
  MN210_RS10855 (MN210_13770) ssb 2593156..2593839 (-) 684 WP_241878558.1 single-stranded DNA-binding protein Machinery gene
  MN210_RS10860 (MN210_13775) - 2593936..2595300 (-) 1365 WP_338412204.1 MFS transporter -
  MN210_RS10865 (MN210_13780) - 2595311..2595568 (-) 258 WP_241878559.1 hypothetical protein -
  MN210_RS10870 (MN210_13785) uvrA 2595835..2598813 (+) 2979 WP_338412205.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24011.96 Da        Isoelectric Point: 5.9034

>NTDB_id=663454 MN210_RS10855 WP_241878558.1 2593156..2593839(-) (ssb) [Psychrobacter raelei strain PraFG1]
MRGVNKVIIIGNLGNDPETRQFSNGGSVTNISVATSEQWTDKQTGEKREATEWHRVTLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKWQDQNGQDRYTTEIRADQMQMLDGATGGMGGGGFTGNQTGGQWGQGGQGNQGNQGFAGNPNTTQGGFQGQQGGG
FQGQQGGNQGGNTFNAPPAATSGQTNFAPQAPAAQPPQPQQTPAFNNQTTTPAGGMTDTPKDDDIPF

Nucleotide


Download         Length: 684 bp        

>NTDB_id=663454 MN210_RS10855 WP_241878558.1 2593156..2593839(-) (ssb) [Psychrobacter raelei strain PraFG1]
ATGCGTGGTGTAAATAAAGTCATTATTATTGGTAACTTAGGCAATGACCCTGAGACCCGCCAGTTCAGTAATGGGGGCAG
TGTGACCAATATTTCGGTGGCGACCTCTGAGCAGTGGACTGATAAACAAACTGGGGAAAAGCGCGAGGCCACTGAGTGGC
ACCGAGTGACCTTATTTAATCGCTTGGGCGAAATCGCAGCTCAGTATTTACGTAAAGGCAGCAAAGTATACATCGAGGGC
AGCCTACGTACCCGTAAATGGCAAGATCAAAACGGGCAAGACCGTTACACTACCGAAATCCGTGCCGATCAAATGCAGAT
GCTAGATGGCGCAACCGGTGGTATGGGCGGTGGCGGGTTTACGGGTAATCAGACCGGTGGCCAATGGGGTCAAGGCGGCC
AAGGTAATCAGGGCAATCAAGGCTTTGCTGGCAACCCGAACACCACTCAAGGTGGTTTTCAAGGTCAACAAGGCGGTGGT
TTTCAAGGTCAACAAGGCGGCAATCAGGGTGGTAATACCTTTAATGCACCACCTGCTGCTACTTCTGGTCAAACTAACTT
TGCGCCACAAGCACCGGCTGCACAGCCACCTCAGCCTCAGCAGACCCCTGCCTTTAACAATCAAACAACCACCCCTGCAG
GTGGTATGACTGATACGCCTAAAGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.018

100

0.48
  ssb Vibrio cholerae strain A1552

60.584

60.352

0.366