Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H7R36_RS02030 Genome accession   NZ_AP022161
Coordinates   460204..460671 (-) Length   155 a.a.
NCBI ID   WP_022646190.1    Uniprot ID   -
Organism   Escherichia coli strain WP5-S18-ESBL-08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 455204..465671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R36_RS02005 (WP5S18E08_04020) rpsG 455345..455815 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  H7R36_RS02010 (WP5S18E08_04030) fusA 455912..458026 (+) 2115 WP_000124700.1 elongation factor G -
  H7R36_RS02015 (WP5S18E08_04040) tuf 458097..459281 (+) 1185 WP_000031783.1 elongation factor Tu -
  H7R36_RS02020 (WP5S18E08_04050) bfd 459464..459658 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  H7R36_RS02025 (WP5S18E08_04060) bfr 459731..460207 (+) 477 WP_000675515.1 bacterioferritin -
  H7R36_RS02030 (WP5S18E08_04070) pilD 460204..460671 (-) 468 WP_022646190.1 A24 family peptidase Machinery gene
  H7R36_RS02035 (WP5S18E08_04080) rpsJ 461050..461361 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  H7R36_RS02040 (WP5S18E08_04090) rplC 461394..462023 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  H7R36_RS02045 (WP5S18E08_04100) rplD 462034..462639 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  H7R36_RS02050 (WP5S18E08_04110) rplW 462636..462938 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  H7R36_RS02055 (WP5S18E08_04120) rplB 462956..463777 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  H7R36_RS02060 (WP5S18E08_04130) rpsS 463794..464072 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  H7R36_RS02065 (WP5S18E08_04140) rplV 464087..464419 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  H7R36_RS02070 (WP5S18E08_04150) rpsC 464437..465138 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  H7R36_RS02075 (WP5S18E08_04160) rplP 465151..465561 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17064.20 Da        Isoelectric Point: 8.1255

>NTDB_id=66342 H7R36_RS02030 WP_022646190.1 460204..460671(-) (pilD) [Escherichia coli strain WP5-S18-ESBL-08]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLATAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=66342 H7R36_RS02030 WP_022646190.1 460204..460671(-) (pilD) [Escherichia coli strain WP5-S18-ESBL-08]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATTCTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGACTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368

Multiple sequence alignment