Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PST29_RS25895 Genome accession   NZ_AP014628
Coordinates   5818001..5819329 (+) Length   442 a.a.
NCBI ID   WP_060844669.1    Uniprot ID   A0AAD1BG76
Organism   Pseudomonas sp. St29     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5813001..5824329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PST29_RS25875 (PST29_5265) pgeF 5814527..5815252 (-) 726 WP_060844668.1 peptidoglycan editing factor PgeF -
  PST29_RS25880 (PST29_5266) rluD 5815249..5816211 (-) 963 WP_016964308.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PST29_RS25885 (PST29_5267) - 5816362..5817384 (+) 1023 WP_060841152.1 outer membrane protein assembly factor BamD -
  PST29_RS25890 (PST29_5268) - 5817512..5817745 (+) 234 WP_060841153.1 PP0621 family protein -
  PST29_RS25895 (PST29_5269) pilR 5818001..5819329 (+) 1329 WP_060844669.1 sigma-54 dependent transcriptional regulator Regulator
  PST29_RS25900 (PST29_5270) thiO 5819326..5820426 (-) 1101 WP_060841155.1 glycine oxidase ThiO -
  PST29_RS25905 (PST29_5271) - 5820482..5820883 (-) 402 WP_060844670.1 type IV pilin protein -
  PST29_RS32015 - 5820899..5821180 (-) 282 WP_148659676.1 hypothetical protein -
  PST29_RS25915 (PST29_5273) - 5821356..5821838 (-) 483 WP_232513182.1 PilX N-terminal domain-containing pilus assembly protein -
  PST29_RS25920 (PST29_5274) - 5821838..5822548 (-) 711 WP_060841159.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PST29_RS25925 (PST29_5275) pilV 5822545..5822988 (-) 444 WP_060844673.1 type IV pilus modification protein PilV -
  PST29_RS25930 (PST29_5276) - 5823390..5823914 (+) 525 WP_060841161.1 GspH/FimT family protein -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49655.21 Da        Isoelectric Point: 8.7556

>NTDB_id=66338 PST29_RS25895 WP_060844669.1 5818001..5819329(+) (pilR) [Pseudomonas sp. St29]
MNPQHRALVVDETREIRSVLEITLGRMRLHTQSARSLQEARSHLAREHFDLCLTDLHLPDGSGLELLQHIRRHHPQLPVA
LLSHEACAPTSALDAETCDLLPKPLDLKRLRDWVATALKRQHSGVATRFSEQLPGDSPPMVILRRHIAKLAASLAPLYIS
GESGSGKERVARLIHQSGPRAAQPFVPVNCGAIPGELMESEFFGHRKGSFSGALMDQPGLFRAAHGGTLFLDEIADLPLV
MQVKLLRTLQEKSVRSVGAQEEQAVDVRILCATHKDLKSEVQAGRFRQDLFYRLNVIELRVPALRERRDDIGLLARHILQ
RLAASSGRPAPQLRPQALQALERYGFPGNVRELENLLERAQALCESPWIEVADLNLPVPEPEDELPPGPALNLDLARHLQ
QVERQLLLQTLEQTRWNRTEAARRLSLSLRSMRYRMKKLGLD

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=66338 PST29_RS25895 WP_060844669.1 5818001..5819329(+) (pilR) [Pseudomonas sp. St29]
ATGAATCCACAGCACAGAGCGCTGGTGGTCGATGAGACCAGGGAAATCCGCTCTGTGCTGGAGATCACCCTGGGCCGCAT
GCGCCTGCACACCCAAAGCGCCCGCAGCCTGCAGGAAGCCCGCAGCCACCTGGCCCGGGAGCATTTCGACCTGTGCCTGA
CCGACCTGCACCTGCCGGACGGCAGCGGCCTGGAGCTGCTGCAGCATATTCGCCGGCACCATCCCCAACTGCCGGTGGCC
CTGCTCAGCCACGAGGCCTGCGCGCCAACCAGCGCCCTGGATGCCGAAACCTGCGACCTGCTGCCAAAGCCTCTGGACCT
CAAGCGCCTGCGGGACTGGGTGGCCACCGCCCTGAAACGACAACACTCGGGTGTGGCGACTCGCTTCTCTGAGCAACTGC
CGGGGGATTCGCCGCCCATGGTCATCCTGCGCCGGCATATTGCCAAACTGGCCGCCAGCCTCGCGCCGCTCTACATCAGC
GGCGAGTCCGGCAGCGGCAAGGAACGAGTGGCCCGATTGATCCACCAGTCAGGCCCCAGAGCCGCACAGCCCTTTGTCCC
GGTCAACTGCGGAGCGATTCCCGGCGAACTGATGGAGAGCGAGTTTTTCGGTCACCGCAAGGGCAGCTTCAGCGGCGCCC
TGATGGATCAGCCCGGACTGTTCCGGGCCGCTCATGGCGGCACCCTGTTCCTCGACGAGATCGCCGACCTGCCGCTGGTC
ATGCAGGTGAAACTGCTGCGAACCCTGCAGGAAAAGTCCGTGCGCTCAGTAGGCGCTCAGGAAGAACAGGCGGTGGATGT
ACGAATCCTCTGTGCGACCCACAAGGATCTGAAAAGCGAAGTGCAAGCCGGACGCTTTCGCCAGGACCTGTTTTATCGGC
TGAATGTCATCGAGTTGCGGGTTCCCGCCCTGCGCGAACGTCGGGACGATATCGGGCTACTGGCCCGGCACATCCTCCAG
CGTCTGGCCGCCAGCAGTGGCCGGCCAGCCCCACAGTTGCGCCCACAAGCACTGCAAGCCCTGGAGCGCTACGGCTTCCC
CGGCAATGTGCGTGAACTGGAGAACCTGCTGGAACGGGCCCAGGCCCTTTGCGAGAGTCCGTGGATCGAAGTGGCAGACC
TGAATTTACCGGTCCCCGAACCTGAGGACGAGCTCCCGCCGGGGCCCGCCCTCAATCTCGATCTGGCGCGGCACCTGCAG
CAGGTGGAGCGCCAGTTGCTGCTCCAGACCCTGGAGCAAACCCGCTGGAACCGCACGGAGGCGGCCCGGCGGTTGAGCCT
GTCGCTGCGTTCGATGCGCTATCGCATGAAGAAGCTAGGACTGGACTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-299)

Response regulator receiver domain (Response_reg)

(8-113)

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.851

100

0.62
  pilR Acinetobacter baumannii strain A118

42.672

100

0.448

Multiple sequence alignment