Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG220_RS22335 Genome accession   NZ_CP108582
Coordinates   5002568..5003956 (-) Length   462 a.a.
NCBI ID   WP_326688768.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4997568..5008956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG220_RS22320 (OG220_22310) - 4998950..4999921 (-) 972 WP_326688771.1 A/G-specific adenine glycosylase -
  OG220_RS22325 (OG220_22315) - 5000148..5001017 (+) 870 WP_405804943.1 hypothetical protein -
  OG220_RS22330 (OG220_22320) disA 5001121..5002242 (-) 1122 WP_326688769.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG220_RS22335 (OG220_22325) radA/sms 5002568..5003956 (-) 1389 WP_326688768.1 DNA repair protein RadA Machinery gene
  OG220_RS22340 (OG220_22330) - 5004166..5006052 (+) 1887 WP_405807460.1 hypothetical protein -
  OG220_RS22345 (OG220_22335) - 5006093..5006908 (-) 816 WP_326688767.1 hypothetical protein -
  OG220_RS22350 (OG220_22340) - 5007048..5007980 (+) 933 WP_326688766.1 Ppx/GppA phosphatase family protein -
  OG220_RS22355 (OG220_22345) - 5008090..5008944 (+) 855 WP_405807462.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48449.42 Da        Isoelectric Point: 7.4357

>NTDB_id=663356 OG220_RS22335 WP_326688768.1 5002568..5003956(-) (radA/sms) [Streptomyces sp. NBC_01187]
MATRKTSAKDRPTYRCTECGWQTAKWLGRCPECHAWGTVEEAGGAPAVRTTAPGRVSVSALPIGQVDGKQATARETSVPE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASADHRTLYVTGEESAGQVRLRADRIGALSDHLYLTAETDLSAV
LGHLDEVKPSLLVLDSVQTVASPEIDGAPGGVAQVREVAGALIRASKERGMSTILVGHVTKDGSIAGPRLLEHLVDVVLQ
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAARLGFTHALVPSDPGRIPEGMRVLEVADIGEALRVLPARPARTG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=663356 OG220_RS22335 WP_326688768.1 5002568..5003956(-) (radA/sms) [Streptomyces sp. NBC_01187]
ATGGCAACCCGTAAGACGTCCGCGAAGGACCGCCCCACCTATCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCGGAGTGCCATGCCTGGGGCACCGTCGAGGAGGCAGGCGGCGCGCCCGCCGTGCGGACCACGGCGCCGG
GAAGAGTATCCGTCTCCGCGCTGCCCATCGGCCAGGTCGACGGCAAGCAGGCCACCGCGCGGGAGACCTCGGTGCCGGAG
CTGGACCGGGTGCTGGGCGGCGGCCTGGTGCCCGGCGCCGTGGTATTGCTCGCCGGTGAGCCGGGCGTCGGGAAGTCGAC
GCTGCTGCTGGATGTGGCCGCCAAGGCGGCGAGCGCCGACCACCGCACGCTGTATGTGACCGGCGAGGAGTCGGCCGGGC
AGGTGCGGCTGCGCGCCGACCGGATCGGGGCGCTCAGCGACCACCTCTACCTCACGGCCGAGACCGACCTGTCTGCCGTG
CTCGGACACCTGGACGAGGTCAAGCCCTCGCTGCTGGTGCTCGATTCGGTGCAGACGGTGGCCTCGCCGGAGATCGACGG
GGCGCCCGGCGGCGTCGCCCAGGTCCGCGAGGTGGCGGGCGCGCTGATCCGCGCGTCCAAGGAGCGCGGCATGTCGACGA
TCCTGGTCGGCCACGTCACCAAGGACGGCTCCATCGCGGGCCCGCGCCTGCTGGAGCACCTGGTGGACGTGGTGCTCCAG
TTCGAGGGCGACAGGCACGCCCGGCTGCGCCTGGTGCGCGGGGTGAAGAACCGCTACGGGACGACGGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCCTCGGGCCTCTTCCTCACCCGCCGCGCCGAACCGGTGC
CCGGCACCTGTCTGACGGTGACGCTGGAGGGGCGCCGTCCGCTGGTGGCCGAGGTGCAGGCGCTCACGGTCGACAGCCAG
ATCCCCTCCCCCCGCAGGACCACCTCGGGGCTGGAGACGTCCCGGGTGTCGATGATGCTGGCGGTGCTGGAGCAGCGCGG
CCGGATCAGCGCCCTGGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGGGTGAAGCTCTCCGAGCCCGCCGCCGACC
TGGCGGTGGCGCTCGCCCTTGCCAGCGCCGCCAGTGACACGCCGCTGCCCAAGAACCTGGTGGCGATAGGGGAGGTCGGC
CTCGCGGGCGAGGTCCGCCGGGTCACGGGTGTCCAGCGGCGGCTGTCGGAGGCGGCCAGGCTCGGCTTCACCCACGCGCT
GGTGCCCTCCGATCCGGGCCGGATCCCCGAGGGCATGCGGGTGCTGGAGGTCGCCGACATCGGAGAGGCCCTCCGCGTCC
TTCCGGCCCGCCCGGCCCGCACCGGCTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(76-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.714

98.268

0.439
  radA Streptococcus mitis NCTC 12261

43.202

98.701

0.426
  radA Streptococcus mitis SK321

43.202

98.701

0.426
  radA Streptococcus pneumoniae TIGR4

43.267

98.052

0.424
  radA Streptococcus pneumoniae R6

43.267

98.052

0.424
  radA Streptococcus pneumoniae Rx1

43.267

98.052

0.424
  radA Streptococcus pneumoniae D39

43.267

98.052

0.424