Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG220_RS21420 Genome accession   NZ_CP108582
Coordinates   4798162..4798761 (+) Length   199 a.a.
NCBI ID   WP_326688928.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4793162..4803761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG220_RS21410 (OG220_21410) - 4794993..4797425 (+) 2433 WP_405804802.1 DNA polymerase III subunit gamma and tau -
  OG220_RS21415 (OG220_21415) - 4797637..4797978 (+) 342 WP_326688929.1 YbaB/EbfC family nucleoid-associated protein -
  OG220_RS21420 (OG220_21420) recR 4798162..4798761 (+) 600 WP_326688928.1 recombination mediator RecR Machinery gene
  OG220_RS21425 (OG220_21425) - 4798948..4799607 (+) 660 WP_326688927.1 DUF5063 domain-containing protein -
  OG220_RS21430 (OG220_21430) - 4799642..4800352 (-) 711 WP_326688926.1 helix-turn-helix domain-containing protein -
  OG220_RS21435 (OG220_21435) - 4800486..4800794 (-) 309 WP_326688925.1 hypothetical protein -
  OG220_RS21440 (OG220_21440) - 4801058..4801870 (-) 813 WP_405804803.1 vWA domain-containing protein -
  OG220_RS21445 (OG220_21445) - 4802221..4803501 (+) 1281 WP_326688924.1 aspartate kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21700.98 Da        Isoelectric Point: 4.8693

>NTDB_id=663352 OG220_RS21420 WP_326688928.1 4798162..4798761(+) (recR) [Streptomyces sp. NBC_01187]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPADVRRLAHALTEVKEKVRFCAVCGNVAQEERCRVCLDPRRDPAV
ICVVEEPKDVVAIERTREFRGCYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMVS
ALGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=663352 OG220_RS21420 WP_326688928.1 4798162..4798761(+) (recR) [Streptomyces sp. NBC_01187]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCTTTTCACATCCTCCAGGCCGAGCCGGCCGATGTGCGCCGTCTCGCACACGCGCTGACCGAGGTCAAGGAGAAGGTCA
GGTTCTGCGCGGTGTGCGGCAATGTCGCGCAGGAGGAGCGGTGCAGGGTCTGCCTCGACCCCCGTCGCGACCCGGCCGTC
ATCTGTGTGGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCTGTTACCACGTGCTCGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCCGACGACCTGCGGATAAGAGAGCTCCTGACTCGTCTGGCCGACGGCA
CGGTCACCGAGCTGATCCTCGCGACGGACCCCAACCTGGAGGGCGAGGCGACGGCCACCTACCTCGCGCGGATGGTGTCC
GCGCTGGGGCTGAAGGTGACGCGGCTGGCCAGCGGGCTGCCCGTCGGAGGGGACCTGGAGTACGCGGACGAGGTCACCCT
GGGGCGGGCCTTCGAAGGAAGGCGGCTCCTGGATGTGTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

98.492

0.533
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447