Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   MM300_RS23580 Genome accession   NZ_CP093301
Coordinates   507212..507685 (-) Length   157 a.a.
NCBI ID   WP_369683967.1    Uniprot ID   -
Organism   Evansella sp. LMS18     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 502212..512685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM300_RS02615 (MM300_02595) - 503188..504321 (-) 1134 WP_255243664.1 SPOR domain-containing protein -
  MM300_RS02620 (MM300_02600) - 504510..505310 (-) 801 WP_255243665.1 hypothetical protein -
  MM300_RS02625 (MM300_02605) - 505294..506196 (-) 903 WP_255243666.1 PilN domain-containing protein -
  MM300_RS02630 (MM300_02610) pilM 506196..507188 (-) 993 WP_255243667.1 type IV pilus biogenesis protein PilM -
  MM300_RS23580 comC 507212..507685 (-) 474 WP_369683967.1 A24 family peptidase Machinery gene
  MM300_RS23585 - 507707..507964 (-) 258 Protein_526 prepilin peptidase -
  MM300_RS23550 - 507995..508417 (-) 423 WP_303837773.1 type II secretion system protein -
  MM300_RS02645 (MM300_02625) - 508532..509737 (-) 1206 WP_255243669.1 type II secretion system F family protein -
  MM300_RS02650 (MM300_02630) pilT 509737..510777 (-) 1041 WP_255245205.1 type IV pilus twitching motility protein PilT Machinery gene
  MM300_RS02655 (MM300_02635) - 510787..512448 (-) 1662 WP_255243670.1 GspE/PulE family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16800.56 Da        Isoelectric Point: 10.1801

>NTDB_id=663350 MM300_RS23580 WP_369683967.1 507212..507685(-) (comC) [Evansella sp. LMS18]
MGWSKELPVALALISLLVIITVSDITTMLIPNKILIFFLGIFIVLRIISPLDPWWSSILGAAVGFGVLLLIALISKGGMG
GGDIKLFGVLGIVLGLQGVLLTLFFASLIGSVAGITAMLTKKIKRGQPVPFGPAIAAGTLLAYFFYQPLLEWYMSFF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=663350 MM300_RS23580 WP_369683967.1 507212..507685(-) (comC) [Evansella sp. LMS18]
GTGGGATGGTCAAAGGAACTGCCAGTAGCTTTAGCCCTGATTTCCCTGCTGGTGATTATTACTGTTTCCGATATCACTAC
GATGCTTATACCAAATAAGATCCTCATCTTTTTTCTGGGTATCTTCATCGTTCTTCGAATAATTTCACCACTGGATCCAT
GGTGGAGCAGCATCCTTGGAGCTGCCGTCGGATTTGGTGTGCTTCTTCTTATCGCCCTCATAAGTAAAGGGGGCATGGGT
GGCGGAGACATCAAGCTTTTTGGTGTGCTCGGTATTGTACTTGGCCTTCAAGGAGTGCTCCTCACATTATTTTTTGCAAG
TTTAATAGGTTCTGTCGCCGGGATTACCGCAATGCTTACGAAAAAAATAAAGCGGGGCCAGCCTGTTCCCTTTGGCCCGG
CAATAGCTGCCGGAACTCTTCTGGCATACTTTTTCTATCAGCCATTACTAGAATGGTATATGAGTTTCTTCTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

51.299

98.089

0.503