Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG220_RS13950 Genome accession   NZ_CP108582
Coordinates   3118704..3119738 (+) Length   344 a.a.
NCBI ID   WP_326690207.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01187     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3113704..3124738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG220_RS13935 (OG220_13910) - 3113753..3113971 (+) 219 WP_326690210.1 heavy-metal-associated domain-containing protein -
  OG220_RS13940 (OG220_13915) - 3114735..3116051 (-) 1317 WP_326690209.1 citrate synthase -
  OG220_RS13945 (OG220_13920) recD/recD2/recDB 3116202..3118448 (-) 2247 WP_327392224.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG220_RS13950 (OG220_13925) cytR 3118704..3119738 (+) 1035 WP_326690207.1 LacI family DNA-binding transcriptional regulator Regulator
  OG220_RS13955 (OG220_13930) - 3119735..3121294 (+) 1560 WP_326690206.1 sugar ABC transporter ATP-binding protein -
  OG220_RS13960 (OG220_13935) - 3121314..3123276 (+) 1963 Protein_2765 substrate-binding domain-containing protein -
  OG220_RS13965 (OG220_13940) - 3123392..3124426 (+) 1035 WP_326690205.1 ribokinase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37204.10 Da        Isoelectric Point: 6.5939

>NTDB_id=663338 OG220_RS13950 WP_326690207.1 3118704..3119738(+) (cytR) [Streptomyces sp. NBC_01187]
MAGIKDVAVHAGVSVATVSRVLNGHSGVRDETRSRVLDAVAELRYRPNTLARSLRTDQTRTLGLVISDVLNPFFTELARA
VEDAARSRGYSVIIGNADEQLTLQDHHVRTLLDRRIDGLLVSPADGDSLALREAAVSGIPMVFVDRWIEGLEVPLVRADG
RSAVRSLVAHLYALGHRRLAIITGPVASTTSNERVRAFRSALREYGLPLPAAYIGQGDFQTESGRRVTNDFFALPEPPDA
VFATDNLMALGVMEQLRRLGLRVPDDVSLAAFDDIPWFLHTDPPITAIAQPTQELGHRAVAALTDLVEGGSPRTESGGGS
AGSVTLSAHLIARRSCGEDERTRR

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=663338 OG220_RS13950 WP_326690207.1 3118704..3119738(+) (cytR) [Streptomyces sp. NBC_01187]
ATGGCAGGCATCAAGGACGTCGCGGTACACGCGGGCGTCTCGGTCGCCACGGTCTCGCGTGTGCTCAACGGGCACAGCGG
GGTCCGTGACGAGACCAGATCCCGGGTGCTGGACGCGGTCGCCGAGCTGCGCTATCGCCCCAACACGCTGGCCCGTTCCC
TGCGCACCGACCAGACCCGCACCCTGGGCCTGGTCATCAGCGATGTGCTGAATCCGTTCTTCACCGAGCTGGCCAGGGCG
GTCGAGGACGCGGCGCGCAGCAGGGGCTACAGCGTCATCATCGGCAACGCGGACGAGCAGCTCACGCTCCAGGACCACCA
TGTGCGCACGCTGCTGGACCGCCGTATCGACGGGCTGCTGGTCTCCCCCGCCGACGGCGACTCCCTCGCGCTGCGGGAGG
CGGCGGTCTCCGGGATCCCGATGGTCTTCGTCGACCGCTGGATCGAGGGCCTGGAGGTGCCGCTCGTACGCGCCGACGGG
CGGTCCGCCGTTCGCTCCCTGGTCGCTCACCTGTACGCCCTGGGACACCGCAGGCTGGCCATCATCACCGGGCCCGTCGC
GAGCACCACGAGCAACGAGCGGGTCCGTGCCTTCCGGTCGGCCCTGCGCGAGTACGGGCTGCCGCTGCCCGCTGCCTACA
TAGGCCAGGGCGACTTCCAGACGGAGAGCGGACGCCGGGTCACCAACGACTTCTTCGCCCTTCCGGAGCCGCCGGACGCG
GTCTTCGCGACGGACAACCTGATGGCGCTGGGCGTGATGGAACAGCTGCGCCGGCTGGGCCTGCGCGTGCCGGACGACGT
GTCCCTGGCCGCGTTCGACGACATCCCGTGGTTCCTGCACACCGACCCCCCGATCACCGCGATCGCCCAGCCGACCCAGG
AGCTGGGCCACCGTGCGGTCGCGGCCCTGACCGACCTCGTGGAGGGGGGATCCCCCCGGACGGAGTCCGGGGGAGGGAGC
GCCGGCTCCGTCACGCTCTCCGCCCACCTCATAGCGCGCCGCTCCTGCGGCGAAGACGAAAGGACGCGCCGTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(4-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.015

97.384

0.36