Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG220_RS13945 Genome accession   NZ_CP108582
Coordinates   3116202..3118448 (-) Length   748 a.a.
NCBI ID   WP_327392224.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3111202..3123448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG220_RS13925 - 3112213..3112407 (+) 195 WP_326692921.1 MerR family transcriptional regulator -
  OG220_RS13930 - 3113035..3113571 (-) 537 Protein_2759 DedA family protein -
  OG220_RS13935 (OG220_13910) - 3113753..3113971 (+) 219 WP_326690210.1 heavy-metal-associated domain-containing protein -
  OG220_RS13940 (OG220_13915) - 3114735..3116051 (-) 1317 WP_326690209.1 citrate synthase -
  OG220_RS13945 (OG220_13920) recD/recD2/recDB 3116202..3118448 (-) 2247 WP_327392224.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG220_RS13950 (OG220_13925) cytR 3118704..3119738 (+) 1035 WP_326690207.1 LacI family DNA-binding transcriptional regulator Regulator
  OG220_RS13955 (OG220_13930) - 3119735..3121294 (+) 1560 WP_326690206.1 sugar ABC transporter ATP-binding protein -
  OG220_RS13960 (OG220_13935) - 3121314..3123276 (+) 1963 Protein_2765 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 80450.05 Da        Isoelectric Point: 7.3621

>NTDB_id=663337 OG220_RS13945 WP_327392224.1 3116202..3118448(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01187]
MTFQPAVLEGVLERITYANEDNGYTVARVDTGRGGELLTVVGALLGAQAGESLRMEGRWGSHPQYGRQFHVDNYVTVLPA
TIQGIRRYLGSGLVKGVGPRIADRIVTHFGVDTLEVIEADPKKLIEVPGLGPKRTKLIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKQYGDASISVVRGNPYRLAADVWGIGFLTADRIAQSVGIPHDSPERVKAGLRHALSQSADQGHCYLPEERL
LSDAVKLLQVDTGLVIDCLGELAGEEEGVVREPVPDPEDPSRTLNAVYLIPFHRAEIALAAQLQRLLRTPEDRLPAFQDV
DWDKALGWLATRTGAELAPEQREAVRLALTRKVAVLTGGPGCGKSFTVRSVVELAAAKQARVLLAAPTGRAARRLSELTG
AEASTVHRLLELKPGGDAAYDRDRPLEADLVVVDEASMLDLLLANKLLKAVPPGAHLLLVGDVDQLPSVGAGEVLRDLLA
EGGPVPAVRLRRIFRQAQQSGVVTNAHRINSGAPPLTQGMSDFFLFVEEDTEAAGALTVDVAARRLPAKFGLDPRRDVQV
LAPMHRGPAGAGALNGLLQQAVTPARPGLPEKRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTALNPDDQRLTVL
TEEDEEVGYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRRALGQAVRTV
SAGRRCTALDHRLRGLPAASTGALASRG

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=663337 OG220_RS13945 WP_327392224.1 3116202..3118448(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01187]
ATGACGTTTCAGCCTGCGGTGCTCGAAGGGGTCCTAGAGCGCATCACCTACGCCAATGAGGACAATGGGTACACCGTCGC
GCGGGTGGACACCGGCCGCGGCGGCGAACTCCTCACGGTGGTGGGCGCGTTGCTGGGCGCGCAGGCGGGCGAATCGCTGC
GCATGGAGGGCCGCTGGGGCTCCCATCCGCAGTACGGACGCCAGTTCCATGTGGACAACTACGTCACGGTGCTGCCCGCC
ACCATCCAGGGCATCCGCCGCTATCTGGGCTCGGGGCTGGTCAAGGGGGTGGGCCCGCGCATCGCCGACCGCATCGTGAC
CCACTTCGGCGTGGACACCCTGGAGGTCATCGAGGCCGACCCGAAGAAGCTCATCGAGGTCCCCGGCCTCGGCCCCAAGC
GCACCAAGCTCATCGCCGCCGCGTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTCGGCGTC
TCCACCTCCATCGCCGTGCGCATCTACAAGCAGTACGGCGACGCGTCGATCTCCGTGGTGCGCGGCAACCCCTACCGGCT
GGCGGCCGACGTGTGGGGCATCGGATTCCTGACCGCCGACCGCATCGCCCAGTCCGTCGGCATCCCGCACGACAGCCCGG
AGCGGGTCAAGGCCGGACTGCGGCACGCCCTGTCGCAGTCGGCCGACCAGGGGCACTGCTATCTGCCCGAGGAGCGCCTC
CTCTCCGATGCCGTCAAGCTCCTCCAGGTCGACACGGGCCTGGTGATCGACTGCCTGGGCGAGCTGGCGGGGGAAGAGGA
AGGCGTGGTGCGCGAGCCGGTGCCCGACCCCGAGGACCCCTCCCGCACTCTGAACGCCGTCTATCTCATCCCCTTCCACC
GTGCGGAGATCGCGCTCGCCGCCCAGCTCCAGCGGCTGCTGCGCACCCCGGAGGACCGGCTGCCCGCCTTCCAGGACGTC
GACTGGGACAAGGCCCTGGGCTGGCTCGCCACGCGCACCGGCGCGGAGCTGGCCCCCGAGCAGCGCGAGGCGGTGCGCCT
CGCGCTCACCCGAAAGGTCGCGGTGCTGACCGGGGGGCCGGGCTGCGGCAAATCCTTCACCGTCCGCTCGGTGGTCGAGC
TGGCCGCCGCCAAGCAGGCCCGGGTGCTGCTGGCGGCACCCACCGGGCGCGCCGCCAGACGGCTCTCCGAGCTGACCGGC
GCCGAGGCGTCCACGGTGCACCGGCTGCTGGAGCTGAAGCCGGGCGGCGACGCGGCCTACGACAGGGACCGCCCGCTGGA
GGCCGATCTGGTGGTGGTCGACGAGGCGTCCATGCTCGACCTGCTGCTGGCCAACAAGCTGCTGAAGGCCGTCCCGCCGG
GCGCCCATCTGCTGCTGGTCGGCGATGTGGACCAGCTGCCCTCGGTGGGCGCGGGGGAGGTGCTGCGCGATCTGCTGGCC
GAGGGCGGCCCGGTGCCCGCCGTGCGGCTGCGACGCATCTTCCGCCAGGCCCAGCAGTCGGGTGTGGTGACCAACGCCCA
CCGCATCAACTCCGGCGCCCCGCCGCTCACCCAGGGAATGAGCGATTTCTTCCTCTTCGTGGAGGAGGACACGGAGGCCG
CGGGGGCGCTGACCGTGGATGTGGCGGCCCGCCGCCTCCCGGCGAAGTTCGGGCTGGATCCGCGCCGCGACGTGCAGGTC
CTGGCCCCGATGCACCGTGGCCCGGCCGGGGCGGGGGCGCTCAACGGGCTGCTCCAGCAGGCGGTCACCCCCGCGCGCCC
CGGGCTGCCGGAGAAGCGCTTCGGGGGACGCGTCTTCCGGGTGGGCGACAAGGTCACCCAGATACGGAACAACTACGAGA
AGGGGGCCAACGGGGTCTTCAACGGCACTGTCGGCGTGGTCACCGCCCTGAACCCCGACGACCAGCGGCTGACGGTGCTC
ACGGAGGAGGACGAGGAGGTCGGCTACGACTTCGACGAACTGGACGAGCTGGCGCACGCCTACGCCGTCACCATCCACCG
CTCCCAGGGCAGCGAGTATCCAGCGGTGGTGATTCCCGTCACCACAGGGGCATGGATGATGCTCCAGCGCAACCTGCTCT
ACACGGCCGTGACCCGGGCCAAGCGCCTCGTGGTGTTGGTCGGTTCCCGCAGGGCACTCGGCCAGGCCGTCCGTACGGTC
TCGGCCGGCCGGCGCTGCACGGCGCTCGACCACCGGCTGCGCGGGCTTCCGGCCGCCTCGACGGGCGCTTTGGCTTCCAG
GGGGTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-707)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-142)

AAA domain (AAA_30)

(336-515)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-639)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.471

100

0.362