Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG519_RS20135 Genome accession   NZ_CP108580
Coordinates   4819878..4821263 (-) Length   461 a.a.
NCBI ID   WP_405585744.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01190     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4814878..4826263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG519_RS20115 (OG519_20060) - 4814886..4815416 (-) 531 WP_405585733.1 SigE family RNA polymerase sigma factor -
  OG519_RS20120 (OG519_20065) - 4816098..4817096 (-) 999 WP_405585736.1 A/G-specific adenine glycosylase -
  OG519_RS20125 (OG519_20070) - 4817378..4818289 (+) 912 WP_405585739.1 hypothetical protein -
  OG519_RS20130 (OG519_20075) disA 4818402..4819562 (-) 1161 WP_405585741.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG519_RS20135 (OG519_20080) radA/sms 4819878..4821263 (-) 1386 WP_405585744.1 DNA repair protein RadA Machinery gene
  OG519_RS20140 (OG519_20085) - 4821445..4823406 (+) 1962 WP_405585747.1 BACON domain-containing protein -
  OG519_RS20145 (OG519_20090) - 4823530..4824315 (-) 786 WP_405592860.1 hypothetical protein -
  OG519_RS20150 (OG519_20095) - 4824541..4825545 (+) 1005 WP_405585750.1 Ppx/GppA family phosphatase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48467.67 Da        Isoelectric Point: 7.9958

>NTDB_id=663290 OG519_RS20135 WP_405585744.1 4819878..4821263(-) (radA/sms) [Streptomyces sp. NBC_01190]
MATRKPVQKDRPSYRCAECGWTTVKWLGRCGECQAWGTIEAFGGAPAIRTTAPGRVTTAAQRIGEVDGRQATARSTGVPE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKASSAQSPTLYITGEESASQVRLRADRIGALADHLYLAAETDLSAV
LGHLDDVKPALLVLDSVQTVASPEIDGAPGGMAQIREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLIRGIKNRYGATDEVGCFELHDEGIIGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDTQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRIKSIGKQDIYTATVGGVKLSEPAADLAVALALASAAIDTPLPKNLVAVGEVG
LAGEVRRVTGVQRRLSEAHRLGFTHALVPPDPGKIPAGMKVIEVSDISDALRALPQRSPRS

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=663290 OG519_RS20135 WP_405585744.1 4819878..4821263(-) (radA/sms) [Streptomyces sp. NBC_01190]
ATGGCCACCCGTAAGCCCGTTCAGAAGGACCGTCCCTCCTACCGCTGCGCCGAATGCGGCTGGACCACGGTCAAGTGGCT
CGGGCGGTGCGGGGAATGCCAGGCCTGGGGGACCATCGAGGCGTTCGGCGGCGCGCCCGCGATCAGGACCACCGCGCCTG
GGCGGGTCACCACCGCCGCCCAGCGGATCGGCGAGGTGGACGGCCGCCAGGCCACCGCCCGTTCCACCGGCGTGCCGGAG
CTCGACCGGGTGCTGGGCGGCGGCCTCGTCCCCGGCGCCGTGGTGCTGCTGGCCGGCGAGCCCGGCGTCGGCAAGTCCAC
CCTGCTGCTCGACGTCGCGGCGAAGGCCTCCTCCGCCCAGTCCCCCACGCTCTACATCACCGGTGAGGAGTCCGCCTCGC
AGGTGCGGCTGCGGGCCGACCGGATCGGCGCGCTCGCCGACCACCTGTATCTCGCCGCCGAGACCGATCTGTCGGCGGTC
CTCGGCCACCTGGACGATGTGAAGCCGGCCCTGCTGGTGCTCGACTCGGTGCAGACCGTCGCCTCCCCGGAGATCGACGG
CGCGCCCGGCGGCATGGCCCAGATCCGCGAGGTCGCGGGCGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCCACCC
TGCTCGTCGGGCACGTCACCAAGGACGGCGCGATCGCCGGCCCACGGCTGCTCGAACACCTGGTGGACGTGGTGCTGAGC
TTCGAGGGCGACCGGCATGCCCGGCTGCGGCTGATCCGCGGGATCAAGAACAGGTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAACTGCACGACGAGGGCATCATCGGACTGGCCGACCCGTCCGGGCTCTTCCTCACCCGGCGTGACGAGCCGGTGC
CCGGCACCTGTCTGACCGTGACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAGGTGCAGGCGCTGACCGTGGACACCCAG
ATCCCCTCGCCGCGCCGCACCACCTCCGGCCTGGAGACCTCGCGGGTGTCGATGATGCTCGCGGTGCTGGAACAGCGCGG
CCGGATCAAGTCGATCGGCAAGCAGGACATCTACACGGCGACGGTGGGCGGGGTGAAGCTCTCCGAACCGGCCGCCGACC
TCGCGGTGGCGCTCGCGCTGGCCAGCGCGGCCATCGACACCCCGCTGCCGAAGAACCTGGTGGCGGTCGGCGAGGTGGGT
CTCGCCGGCGAGGTCCGGCGGGTCACCGGCGTGCAGCGCCGCCTGTCGGAGGCACACCGGCTCGGCTTCACCCACGCGCT
GGTGCCGCCGGACCCGGGCAAGATCCCGGCCGGGATGAAGGTGATCGAGGTCTCGGACATCAGCGACGCACTGCGCGCGC
TGCCCCAGCGGTCGCCCCGCTCATAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-40)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(79-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.478

98.048

0.416
  radA Streptococcus mitis SK321

42.013

99.132

0.416
  radA Streptococcus mitis NCTC 12261

42.013

99.132

0.416
  radA Streptococcus pneumoniae Rx1

42.07

98.482

0.414
  radA Streptococcus pneumoniae TIGR4

42.07

98.482

0.414
  radA Streptococcus pneumoniae D39

42.07

98.482

0.414
  radA Streptococcus pneumoniae R6

42.07

98.482

0.414