Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MM271_RS18345 Genome accession   NZ_CP093300
Coordinates   3703483..3705300 (-) Length   605 a.a.
NCBI ID   WP_243528797.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS39     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3698483..3710300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM271_RS18310 (MM271_18310) - 3699099..3699479 (-) 381 WP_243528792.1 hypothetical protein -
  MM271_RS18315 (MM271_18315) - 3699643..3700224 (+) 582 WP_243528794.1 CYTH domain-containing protein -
  MM271_RS23845 - 3700309..3700950 (+) 642 WP_279390763.1 lytic transglycosylase domain-containing protein -
  MM271_RS18325 (MM271_18325) - 3701027..3701383 (-) 357 WP_243528796.1 (2Fe-2S) ferredoxin domain-containing protein -
  MM271_RS18330 (MM271_18330) - 3701561..3701965 (+) 405 WP_243534592.1 globin -
  MM271_RS18335 (MM271_18335) - 3702041..3702880 (+) 840 WP_243534593.1 ClpXP adapter SpxH family protein -
  MM271_RS18340 (MM271_18340) - 3702957..3703136 (+) 180 WP_035179780.1 hypothetical protein -
  MM271_RS18345 (MM271_18345) pepF 3703483..3705300 (-) 1818 WP_243528797.1 oligoendopeptidase F Regulator
  MM271_RS18350 (MM271_18350) - 3705404..3706588 (-) 1185 WP_243528798.1 competence protein CoiA family protein -
  MM271_RS18355 (MM271_18355) cls 3706812..3708323 (-) 1512 WP_243528799.1 cardiolipin synthase -
  MM271_RS18360 (MM271_18360) mecA 3708444..3709103 (-) 660 WP_243528800.1 adaptor protein MecA -
  MM271_RS18365 (MM271_18365) - 3709485..3710156 (+) 672 WP_243528802.1 TerC family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69319.24 Da        Isoelectric Point: 4.9268

>NTDB_id=663289 MM271_RS18345 WP_243528797.1 3703483..3705300(-) (pepF) [Alkalihalobacillus sp. LMS39]
MTTKATKTLPKREEIPVEKTWDLQAIYANDGEWEREFNAIKDLLPKIKEYQGKLGSSSKMLFDALQQSDEISLKLGKLYT
YAHMRNDQDTTNSFYQGLHDRAASLAAQVAQAASFMTPEILAIPEEKIAEFLQENHGLRLYEHMLDQLSKQRPHVLTESE
ESILAQASEVTSSPSNTFGMLNNADIKFPTVTDENGEEVEITHGRFITFLESSNRQVREDAFKAVYETYGKYKNTFASTL
SGQVKRDLFYANVRKYDSARHAALSKNDIPEIVYDQLVETINKNLHLLHRYVKLRKKILGVDELHMYDLYTPLVKDVKME
IPYEKAKQLVVDGVAPLGEEYVNIIKQGYDNRWIDVEENVGKRSGAYSSGAYGTMPYILMNWQDNVNNLFTLAHELGHSL
HSYYTRETQPYPYGDYTIFVAEVASTLNEALLNDHLLKITTDKQEKLYLLNHFLEGFRGTVFRQTMFAEFEQKIHEMAAA
GESLTAELLTKTYYDLNVKYFGNDITIDEEIGLEWMRIPHFYYNFYVYQYATGYSAATALSKQILEEGEEAVKRYISFIK
AGSSDYPIEVLKKAGVDMTSADPIQEACSVFEKTLGEMEKLLSEE

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=663289 MM271_RS18345 WP_243528797.1 3703483..3705300(-) (pepF) [Alkalihalobacillus sp. LMS39]
TTGACAACAAAAGCGACAAAAACATTACCAAAGCGTGAGGAGATTCCTGTTGAAAAAACGTGGGATCTGCAAGCGATATA
TGCAAATGACGGTGAATGGGAACGAGAATTTAATGCAATTAAAGATTTACTCCCAAAAATCAAAGAGTATCAAGGGAAGT
TAGGCAGTTCATCAAAGATGTTATTTGATGCGTTGCAACAATCTGATGAAATCTCATTAAAGCTAGGAAAGCTTTATACA
TATGCTCATATGAGAAATGACCAAGATACAACGAATTCATTTTACCAAGGTTTACATGACAGAGCAGCAAGCTTAGCGGC
TCAAGTTGCTCAAGCGGCTTCTTTTATGACACCAGAAATTTTAGCAATTCCTGAAGAGAAAATTGCGGAATTTTTACAGG
AAAACCATGGTTTGCGTTTATATGAACATATGTTGGATCAATTATCGAAACAACGTCCACATGTTTTAACAGAATCAGAA
GAATCCATTTTAGCTCAAGCAAGTGAAGTAACGAGTTCACCAAGTAACACATTTGGGATGTTAAATAACGCAGACATTAA
ATTTCCGACGGTTACAGATGAGAACGGTGAAGAAGTTGAAATTACGCATGGGCGTTTTATTACATTTCTTGAGTCAAGTA
ATCGCCAAGTTAGAGAAGATGCGTTTAAAGCCGTGTATGAAACGTATGGGAAATATAAAAATACGTTTGCAAGTACATTA
AGTGGGCAAGTGAAACGTGATTTATTTTATGCGAATGTGCGAAAATATGATTCAGCAAGACATGCTGCGTTAAGTAAAAA
TGATATTCCTGAGATTGTTTACGATCAATTAGTAGAAACAATAAATAAAAACTTACATTTATTGCATCGCTATGTAAAAC
TACGTAAAAAAATACTTGGTGTCGATGAATTGCATATGTATGATTTATATACGCCTTTAGTGAAAGATGTAAAAATGGAA
ATTCCGTATGAGAAAGCAAAACAATTAGTCGTTGATGGCGTAGCCCCTCTTGGTGAGGAATATGTAAATATTATTAAACA
AGGTTACGACAATCGTTGGATCGATGTTGAGGAAAATGTAGGTAAACGAAGTGGAGCCTATTCGTCAGGGGCATATGGAA
CAATGCCGTATATTTTAATGAACTGGCAAGATAATGTGAATAATTTGTTTACACTTGCTCATGAGTTAGGCCATTCTTTG
CATAGTTATTATACGCGTGAGACACAACCATATCCGTATGGTGATTATACGATTTTCGTTGCTGAAGTCGCTTCTACACT
AAACGAAGCATTGTTAAACGACCATTTATTAAAAATTACAACAGATAAACAAGAAAAACTGTATTTGCTTAATCACTTCT
TAGAAGGATTTAGAGGTACGGTCTTTAGACAAACGATGTTTGCTGAATTTGAACAAAAAATTCATGAAATGGCAGCAGCA
GGGGAGTCTTTAACAGCGGAGTTACTAACGAAAACATATTATGATTTAAATGTGAAATACTTTGGAAATGACATTACCAT
TGATGAAGAAATCGGTCTAGAATGGATGCGGATCCCACATTTTTATTATAATTTTTATGTGTACCAATACGCGACGGGAT
ATAGTGCTGCCACTGCGTTATCGAAACAAATTTTAGAAGAAGGCGAAGAAGCGGTGAAACGTTATATTAGCTTTATTAAA
GCTGGTAGCTCGGATTATCCAATTGAAGTCTTGAAAAAAGCAGGTGTTGATATGACATCAGCAGATCCAATTCAAGAAGC
ATGCTCTGTGTTTGAAAAAACATTGGGTGAAATGGAGAAACTTCTTTCAGAAGAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(119-188)

Peptidase family M3 (Peptidase_M3)

(209-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.408

97.686

0.483