Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG519_RS15160 Genome accession   NZ_CP108580
Coordinates   3668724..3669323 (-) Length   199 a.a.
NCBI ID   WP_405583515.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01190     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3663724..3674323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG519_RS15140 (OG519_15110) - 3663798..3665000 (-) 1203 WP_405583509.1 hypothetical protein -
  OG519_RS15145 (OG519_15115) - 3664997..3665563 (-) 567 WP_405583511.1 SigE family RNA polymerase sigma factor -
  OG519_RS15150 (OG519_15120) - 3666055..3667443 (-) 1389 WP_405583513.1 aspartate kinase -
  OG519_RS15155 (OG519_15125) - 3667727..3668353 (-) 627 Protein_2982 DUF5063 domain-containing protein -
  OG519_RS15160 (OG519_15130) recR 3668724..3669323 (-) 600 WP_405583515.1 recombination mediator RecR Machinery gene
  OG519_RS15165 (OG519_15135) - 3669488..3669820 (-) 333 WP_405583517.1 YbaB/EbfC family nucleoid-associated protein -
  OG519_RS15170 (OG519_15140) - 3670196..3672790 (-) 2595 WP_405583519.1 DNA polymerase III subunit gamma and tau -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21738.05 Da        Isoelectric Point: 5.4019

>NTDB_id=663280 OG519_RS15160 WP_405583515.1 3668724..3669323(-) (recR) [Streptomyces sp. NBC_01190]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQADPADVRRLAHVLSEVKAKVRFCAVCGNVAQDEQCRVCRDPRRDPAV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=663280 OG519_RS15160 WP_405583515.1 3668724..3669323(-) (recR) [Streptomyces sp. NBC_01190]
GTGTACGAAGGCGTGGTTCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTGGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGACCCCGCCGACGTACGGCGCCTCGCGCATGTGCTGTCCGAGGTCAAGGCCAAGGTGC
GGTTCTGTGCGGTGTGCGGGAACGTCGCCCAGGACGAGCAGTGCCGGGTGTGCCGTGATCCGCGCCGGGACCCCGCGGTG
ATCTGCGTGGTCGAGGAGCCCAAGGACGTGGTGGCGGTCGAGCGCACCCGTGAGTTCCGCGGGAAATACCACGTGCTGGG
CGGTGCGATCAGCCCGATCGAGGGCGTGGGGCCTGACGACTTGCGGATCAGGGAATTGCTCGCCCGCCTCGCGGACGGCA
CCGTCACCGAGCTGATCCTCGCGACGGACCCCAATCTGGAAGGGGAGGCCACGGCCACGTATCTGGCCCGGATGGTGAAG
CCCATGGGTCTGCGGGTGACCCGCCTCGCCAGTGGGCTCCCGGTGGGCGGGGACCTGGAGTACGCGGACGAGGTCACGCT
GGGGCGGGCCTTCGAAGGAAGGCGGTTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

98.492

0.533
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452