Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MM221_RS08640 Genome accession   NZ_CP093299
Coordinates   1868051..1868602 (-) Length   183 a.a.
NCBI ID   WP_255237778.1    Uniprot ID   -
Organism   Salipaludibacillus sp. LMS25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1863051..1873602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM221_RS08620 (MM221_08535) rplI 1864078..1864521 (-) 444 WP_255237774.1 50S ribosomal protein L9 -
  MM221_RS08625 (MM221_08540) - 1864518..1866488 (-) 1971 WP_255237775.1 DHH family phosphoesterase -
  MM221_RS08630 (MM221_08545) - 1866501..1867439 (-) 939 WP_255237776.1 YybS family protein -
  MM221_RS08635 (MM221_08550) rpsR 1867780..1868007 (-) 228 WP_255237777.1 30S ribosomal protein S18 -
  MM221_RS08640 (MM221_08555) ssbA 1868051..1868602 (-) 552 WP_255237778.1 single-stranded DNA-binding protein Machinery gene
  MM221_RS08645 (MM221_08560) rpsF 1868641..1868928 (-) 288 WP_255237779.1 30S ribosomal protein S6 -
  MM221_RS08650 (MM221_08565) ychF 1869137..1870237 (-) 1101 WP_255237780.1 redox-regulated ATPase YchF -
  MM221_RS08655 (MM221_08570) - 1870656..1870862 (-) 207 WP_255237781.1 DUF951 domain-containing protein -
  MM221_RS08660 (MM221_08575) - 1870938..1871963 (-) 1026 WP_255237782.1 hypothetical protein -
  MM221_RS08665 (MM221_08580) yyaC 1872050..1872661 (+) 612 WP_255237783.1 spore protease YyaC -
  MM221_RS08670 - 1873283..1873453 (-) 171 WP_255237784.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19475.03 Da        Isoelectric Point: 4.5093

>NTDB_id=663241 MM221_RS08640 WP_255237778.1 1868051..1868602(-) (ssbA) [Salipaludibacillus sp. LMS25]
MINRVVLVGRLTKDPELRYTANGIAVASFTLAVNRPFSNQQGNREADFINCVVWRKQAENVANFLKKGSQAGVDGRIQTR
SFDNNEGRRVFMTEVVAESVQFLEPRGSGGSGGGGQYAGGYGESDNSGYQNTPNQGGFGQGNQGNQESQGNQGGYGGGQG
SQNDDPFAGDGKPIDINDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=663241 MM221_RS08640 WP_255237778.1 1868051..1868602(-) (ssbA) [Salipaludibacillus sp. LMS25]
ATGATAAACCGTGTCGTTTTAGTGGGACGTTTAACGAAAGACCCTGAACTGCGGTACACTGCCAATGGCATTGCTGTCGC
ATCTTTTACTTTAGCTGTAAATCGCCCATTTTCTAACCAACAAGGAAATCGAGAAGCGGATTTTATTAACTGTGTGGTAT
GGAGAAAACAAGCCGAAAACGTCGCTAACTTCTTGAAAAAAGGAAGTCAGGCGGGTGTTGACGGCCGTATACAAACACGA
AGTTTTGATAATAACGAAGGGCGTCGTGTTTTCATGACAGAAGTGGTGGCTGAAAGCGTTCAGTTCCTTGAGCCTCGAGG
TTCAGGTGGATCTGGCGGGGGAGGCCAGTATGCAGGTGGCTATGGTGAAAGCGACAACAGCGGTTATCAGAACACTCCAA
ACCAAGGAGGTTTTGGTCAAGGCAACCAAGGCAACCAAGAGAGCCAAGGGAATCAAGGTGGATATGGTGGCGGTCAAGGA
TCACAAAATGATGATCCATTTGCCGGAGACGGAAAACCAATTGACATTAATGATGATGACCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.76

100

0.678
  ssb Latilactobacillus sakei subsp. sakei 23K

51.913

100

0.519