Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MNY35_RS16095 Genome accession   NZ_CP093298
Coordinates   3355759..3356403 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain MN-13     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3350759..3361403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY35_RS16070 (MNY35_16055) - 3351157..3351498 (-) 342 WP_015418107.1 hypothetical protein -
  MNY35_RS16075 (MNY35_16060) degQ 3351964..3352104 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  MNY35_RS16080 (MNY35_16065) comQ 3352235..3353173 (+) 939 WP_020954300.1 polyprenyl synthetase family protein Regulator
  MNY35_RS16085 (MNY35_16070) comX 3353173..3353349 (+) 177 WP_007408675.1 competence pheromone ComX -
  MNY35_RS16090 (MNY35_16075) comP 3353369..3355678 (+) 2310 WP_033574914.1 histidine kinase Regulator
  MNY35_RS16095 (MNY35_16080) comA 3355759..3356403 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  MNY35_RS16100 (MNY35_16085) - 3356425..3356808 (+) 384 WP_007408674.1 hotdog fold thioesterase -
  MNY35_RS16105 (MNY35_16090) mnhG 3356848..3357222 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  MNY35_RS16110 (MNY35_16095) - 3357206..3357490 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  MNY35_RS16115 (MNY35_16100) - 3357490..3357966 (-) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  MNY35_RS16120 (MNY35_16105) - 3357972..3359453 (-) 1482 WP_033574915.1 Na+/H+ antiporter subunit D -
  MNY35_RS16125 (MNY35_16110) - 3359446..3359787 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  MNY35_RS16130 (MNY35_16115) - 3359787..3360218 (-) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=663202 MNY35_RS16095 WP_003152052.1 3355759..3356403(+) (comA) [Bacillus amyloliquefaciens strain MN-13]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=663202 MNY35_RS16095 WP_003152052.1 3355759..3356403(+) (comA) [Bacillus amyloliquefaciens strain MN-13]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCTAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCACGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACATCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864