Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MNY35_RS09355 Genome accession   NZ_CP093298
Coordinates   1964479..1965627 (-) Length   382 a.a.
NCBI ID   WP_033575082.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MN-13     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1959479..1970627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY35_RS09325 (MNY35_09320) - 1959619..1960377 (-) 759 Protein_1829 ABC transporter ATP-binding protein -
  MNY35_RS09330 (MNY35_09325) - 1960371..1961318 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  MNY35_RS09335 (MNY35_09330) ceuB 1961308..1962261 (-) 954 WP_015239156.1 ABC transporter permease Machinery gene
  MNY35_RS09340 (MNY35_09335) - 1962675..1964039 (+) 1365 WP_033575080.1 aspartate kinase -
  MNY35_RS09345 (MNY35_09340) - 1964134..1964229 (+) 96 WP_076983091.1 YjcZ family sporulation protein -
  MNY35_RS09350 (MNY35_09345) phrC 1964376..1964495 (-) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  MNY35_RS09355 (MNY35_09350) rapC 1964479..1965627 (-) 1149 WP_033575082.1 Rap family tetratricopeptide repeat protein Regulator
  MNY35_RS09360 (MNY35_09355) - 1965780..1967213 (-) 1434 WP_015416810.1 HAMP domain-containing sensor histidine kinase -
  MNY35_RS09365 (MNY35_09360) - 1967200..1967883 (-) 684 WP_007410267.1 response regulator transcription factor -
  MNY35_RS09370 (MNY35_09365) - 1968095..1969531 (+) 1437 WP_033575084.1 ABC transporter permease -
  MNY35_RS09375 (MNY35_09370) - 1969546..1970229 (+) 684 WP_033575085.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45491.70 Da        Isoelectric Point: 4.9916

>NTDB_id=663175 MNY35_RS09355 WP_033575082.1 1964479..1965627(-) (rapC) [Bacillus amyloliquefaciens strain MN-13]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISSCFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=663175 MNY35_RS09355 WP_033575082.1 1964479..1965627(-) (rapC) [Bacillus amyloliquefaciens strain MN-13]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGATTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTATTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACTTTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCTCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.461

100

0.825
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568