Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG702_RS19110 Genome accession   NZ_CP108568
Coordinates   4253181..4253780 (-) Length   199 a.a.
NCBI ID   WP_327290105.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4248181..4258780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG702_RS19090 (OG702_19115) - 4248673..4249974 (-) 1302 WP_327290103.1 hypothetical protein -
  OG702_RS19095 (OG702_19120) - 4249971..4250618 (-) 648 WP_327293287.1 SigE family RNA polymerase sigma factor -
  OG702_RS19100 (OG702_19125) - 4250977..4252302 (-) 1326 WP_327290104.1 aspartate kinase -
  OG702_RS19105 (OG702_19130) - 4252487..4253173 (-) 687 WP_327293288.1 DUF5063 domain-containing protein -
  OG702_RS19110 (OG702_19135) recR 4253181..4253780 (-) 600 WP_327290105.1 recombination mediator RecR Machinery gene
  OG702_RS19115 (OG702_19140) - 4253840..4254172 (-) 333 WP_327290106.1 YbaB/EbfC family nucleoid-associated protein -
  OG702_RS19120 (OG702_19145) - 4254393..4256684 (-) 2292 WP_327290107.1 DNA polymerase III subunit gamma and tau -
  OG702_RS19135 (OG702_19160) - 4257066..4258334 (-) 1269 WP_327290108.1 site-specific integrase -
  OG702_RS19140 (OG702_19165) - 4258421..4258654 (-) 234 WP_327290109.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21762.14 Da        Isoelectric Point: 5.7860

>NTDB_id=663149 OG702_RS19110 WP_327290105.1 4253181..4253780(-) (recR) [Streptomyces sp. NBC_01198]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQADPADVRRLVHVLAEVKAKVRFCKVCGNVAQDELCRVCRDPRRDPAV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIDGVGPDDLRIAELLRRLADGTVTELILATDPNLEGEATATYLARTVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=663149 OG702_RS19110 WP_327290105.1 4253181..4253780(-) (recR) [Streptomyces sp. NBC_01198]
GTGTATGAAGGCGTGGTGCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTGGGTCCCAAGAGCGCGCAGCGCAT
CGCCTTCCACATCCTGCAGGCCGACCCGGCGGACGTCCGCCGCCTCGTGCACGTGCTGGCCGAGGTGAAGGCGAAGGTCC
GCTTCTGCAAGGTGTGCGGCAACGTCGCGCAGGACGAGCTGTGCCGGGTGTGCCGCGATCCGCGGCGCGACCCGGCGGTG
ATCTGCGTGGTCGAGGAGCCCAAGGACGTGGTCGCGATCGAGCGGACCCGCGAGTTCCGCGGGAAATACCACGTGCTGGG
CGGGGCGATCAGCCCGATCGACGGTGTCGGCCCCGACGATCTGCGGATCGCGGAACTGCTCCGCAGGCTGGCCGACGGCA
CCGTCACCGAGCTGATCCTGGCGACGGACCCGAATCTGGAGGGCGAGGCCACGGCGACGTATCTCGCCCGGACGGTGAAA
CCCATGGGGCTGCGCGTGACGCGCCTGGCCAGCGGCCTGCCGGTGGGTGGCGACTTGGAATACGCGGACGAGGTCACGCT
GGGGCGGGCCTTCGAAGGGAGGCGGTTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

98.492

0.533
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447