Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   POS17_RS26050 Genome accession   NZ_AP014627
Coordinates   5895632..5896960 (+) Length   442 a.a.
NCBI ID   WP_060841154.1    Uniprot ID   -
Organism   Pseudomonas sp. Os17     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5890632..5901960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POS17_RS26030 (POS17_5269) pgeF 5892158..5892883 (-) 726 WP_060841151.1 peptidoglycan editing factor PgeF -
  POS17_RS26035 (POS17_5270) rluD 5892880..5893842 (-) 963 WP_016964308.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  POS17_RS26040 (POS17_5271) - 5893993..5895015 (+) 1023 WP_060841152.1 outer membrane protein assembly factor BamD -
  POS17_RS26045 (POS17_5272) - 5895143..5895376 (+) 234 WP_060841153.1 PP0621 family protein -
  POS17_RS26050 (POS17_5273) pilR 5895632..5896960 (+) 1329 WP_060841154.1 sigma-54 dependent transcriptional regulator Regulator
  POS17_RS26055 (POS17_5274) thiO 5896957..5898057 (-) 1101 WP_060841155.1 glycine oxidase ThiO -
  POS17_RS26060 (POS17_5275) - 5898113..5898514 (-) 402 WP_060841156.1 type IV pilin protein -
  POS17_RS31980 - 5898530..5898811 (-) 282 WP_129406524.1 hypothetical protein -
  POS17_RS26070 (POS17_5277) - 5898987..5899469 (-) 483 WP_231978983.1 PilX N-terminal domain-containing pilus assembly protein -
  POS17_RS26075 (POS17_5278) - 5899469..5900179 (-) 711 WP_060841159.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  POS17_RS26080 (POS17_5279) pilV 5900176..5900619 (-) 444 WP_060841160.1 type IV pilus modification protein PilV -
  POS17_RS26085 (POS17_5280) - 5901021..5901545 (+) 525 WP_060841161.1 GspH/FimT family protein -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49605.15 Da        Isoelectric Point: 8.5246

>NTDB_id=66314 POS17_RS26050 WP_060841154.1 5895632..5896960(+) (pilR) [Pseudomonas sp. Os17]
MNPQHRALVVDETREIRSVLEITLGRMRLHTQSARSLQEARSHLAREHFDLCLTDLHLPDGSGLELLQHIRRHHPQLPVA
LLSHEACAPTSALDAETCDLLPKPLDLKRLRDWVATALKRPHSSVATRFSEQLPGDSPPMVILRRHIAKLAASLAPLYIS
GESGSGKERVARLIHQSGPRAAQPFVPVNCGAIPGELMESEFFGHRKGSFSGALMDQPGLFRAAHGGTLFLDEIADLPLV
MQVKLLRTLQEKSVRSVGAQEEQAVDVRILCATHKDLKSEVQAGRFRQDLFYRLNVIELRVPALRERRGDIGLLARHILQ
RLAASSGRPAPQLHPQALQALERYDFPGNVRELENLLERAQALCESPWIEVADLNLPVPEPEDELPPGPALNLDLARHLQ
QVERQLLLQTLEQTRWNRTEAARRLGLSLRSMRYRMKKLGLD

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=66314 POS17_RS26050 WP_060841154.1 5895632..5896960(+) (pilR) [Pseudomonas sp. Os17]
ATGAATCCACAGCACAGAGCGCTGGTGGTCGATGAGACCAGGGAAATCCGCTCTGTGCTGGAGATCACCCTGGGCCGCAT
GCGCCTGCACACCCAAAGCGCCCGCAGCCTGCAGGAGGCCCGCAGCCACCTGGCCCGGGAGCATTTCGACCTGTGCCTGA
CCGACCTGCACCTGCCGGACGGCAGCGGCCTGGAGCTGCTGCAGCATATTCGCCGGCACCATCCCCAACTGCCGGTGGCC
CTGCTCAGCCACGAGGCCTGCGCGCCAACCAGCGCCCTGGATGCCGAAACCTGCGACCTGCTGCCAAAGCCTCTGGACCT
CAAGCGCCTGCGGGACTGGGTGGCCACCGCCCTGAAACGACCACACTCGAGTGTAGCGACTCGCTTCTCTGAGCAACTGC
CGGGGGATTCGCCGCCCATGGTCATCCTGCGCCGGCATATTGCCAAACTGGCCGCCAGCCTCGCGCCGCTCTACATCAGC
GGCGAGTCCGGCAGCGGCAAGGAACGAGTGGCCCGATTGATCCACCAGTCAGGCCCCAGAGCCGCACAGCCCTTTGTCCC
AGTCAACTGCGGAGCGATTCCCGGCGAACTGATGGAGAGCGAGTTTTTCGGTCACCGCAAGGGCAGCTTCAGCGGCGCCC
TGATGGATCAGCCCGGACTGTTCCGGGCCGCACACGGCGGCACCCTGTTCCTTGACGAGATCGCCGACCTGCCGCTGGTC
ATGCAGGTGAAACTGCTGCGAACCCTGCAGGAAAAGTCCGTGCGCTCAGTAGGCGCTCAGGAAGAACAGGCGGTGGATGT
ACGAATACTCTGTGCGACCCACAAGGATCTGAAAAGCGAAGTGCAAGCCGGACGCTTTCGCCAGGACCTGTTTTATCGGC
TGAATGTCATCGAGTTGCGGGTTCCCGCCCTGCGCGAACGTCGGGGCGATATCGGGCTACTGGCCCGGCACATTCTCCAG
CGTCTGGCCGCCAGCAGTGGCCGGCCAGCCCCACAGTTGCACCCACAAGCACTGCAAGCCCTGGAGCGCTACGACTTCCC
CGGCAATGTGCGTGAACTGGAGAACCTGCTGGAACGGGCCCAGGCCCTTTGCGAGAGTCCGTGGATCGAAGTGGCAGACC
TGAATTTACCGGTCCCCGAACCTGAGGACGAGCTCCCGCCGGGGCCCGCCCTCAATCTCGATCTGGCGCGTCACCTGCAG
CAGGTGGAGCGCCAGTTGCTGCTCCAGACCCTGGAGCAAACCCGCTGGAACCGCACGGAGGCGGCCCGGCGGTTGGGCCT
GTCGCTGCGTTCGATGCGCTATCGCATGAAGAAGCTCGGACTGGACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)

Response regulator receiver domain (Response_reg)

(8-113)

Sigma-54 interaction domain (Sigma54_activat)

(135-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.162

100

0.624
  pilR Acinetobacter baumannii strain A118

42.672

100

0.448

Multiple sequence alignment