Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG279_RS24985 Genome accession   NZ_CP108565
Coordinates   5654670..5655746 (+) Length   358 a.a.
NCBI ID   WP_327436366.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01201     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5649670..5660746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG279_RS24970 (OG279_25000) - 5649800..5651110 (+) 1311 WP_147963321.1 deoxyguanosinetriphosphate triphosphohydrolase -
  OG279_RS24975 (OG279_25005) - 5651229..5652488 (+) 1260 WP_306104284.1 FAD-dependent oxidoreductase -
  OG279_RS24980 (OG279_25010) dnaG 5652585..5654492 (+) 1908 WP_147963319.1 DNA primase -
  OG279_RS24985 (OG279_25015) rpoS 5654670..5655746 (+) 1077 WP_327436366.1 RNA polymerase sigma factor Regulator
  OG279_RS24990 (OG279_25020) - 5655824..5657746 (-) 1923 WP_147963318.1 ABC transporter ATP-binding protein -
  OG279_RS24995 (OG279_25025) rcrP 5657746..5659479 (-) 1734 WP_147963317.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 40215.95 Da        Isoelectric Point: 5.5719

>NTDB_id=663089 OG279_RS24985 WP_327436366.1 5654670..5655746(+) (rpoS) [Streptomyces sp. NBC_01201]
MQTRTVPTTTEHVPAIPAQNRVTRHPETAGTPEPVLEEPVEPPELPQPRSRPEAAGPTSDLFRQYLREIGRIPLLSAAEE
VELARRVEAGLFAEERLAGTPDPDSGLAVDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIR
AVEKFDYARGCKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAQLDLTPERV
AEVLRLAQEPVSLHAPVGEEDDVAFGDLIEDSDAASPVETAAFLLLREHLEAVLSTLGERERKVVQLRYGLDDGRPRTLE
EIGRIFGVTRERIRQIESKTLDKLRGHAFADQLRGYLD

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=663089 OG279_RS24985 WP_327436366.1 5654670..5655746(+) (rpoS) [Streptomyces sp. NBC_01201]
GTGCAGACCCGGACCGTGCCGACCACGACCGAGCATGTCCCGGCGATTCCCGCGCAGAACCGGGTCACACGTCACCCGGA
GACGGCGGGCACGCCCGAACCGGTGCTGGAGGAACCGGTGGAGCCCCCGGAGCTCCCGCAGCCGCGGAGCCGCCCGGAGG
CAGCCGGCCCGACCTCCGACCTCTTCCGCCAGTACTTACGCGAGATCGGACGGATACCGCTGCTGAGCGCCGCCGAGGAG
GTGGAGCTCGCCCGCCGTGTCGAGGCCGGACTCTTCGCCGAGGAACGGCTCGCCGGCACCCCGGACCCCGACTCCGGGCT
CGCCGTCGATCTGGACCGGCTCGTGGTCATGGGGCGGATGGCGAAGCGCCGGCTCATCGAGGCCAACCTCCGCCTCGTGG
TCTCCGTGGCCAAGCGTTACGTCGGCCGGGGGCTGACCATGCTCGACCTGGTCCAGGAGGGGAACCTCGGCCTGATCAGG
GCGGTCGAGAAGTTCGACTACGCACGGGGCTGCAAGTTCTCCACGTACGCGACCTGGTGGATCCGCCAGGCGATGTCCCG
CGCACTGGCCGACCAGGCCCGGACCATAAGGGTCCCGGTGCACGTCGTGGAGCTGATCAACCGGGTCGTACGCGTCCAGC
GCCGGATGCTCCAGGAACGCGGCTACGAGCCCACCCCCGAAGAGGTCGCGGCACAGCTCGACCTGACCCCCGAACGCGTC
GCCGAGGTCCTGCGCCTCGCCCAGGAACCCGTGTCCCTGCACGCCCCGGTCGGCGAGGAGGACGACGTCGCCTTCGGTGA
CCTCATCGAGGACAGCGACGCCGCCTCACCGGTGGAGACCGCGGCCTTCCTCCTGCTGCGCGAACACCTGGAGGCGGTCC
TCTCCACGCTCGGTGAGCGCGAGAGGAAGGTCGTCCAGCTGCGCTACGGACTGGACGACGGACGGCCCCGCACGCTGGAG
GAGATCGGCAGGATCTTCGGCGTGACCCGCGAACGCATCCGCCAGATCGAGTCCAAGACCCTCGACAAGCTGCGGGGCCA
CGCCTTCGCCGACCAGCTCCGCGGCTATCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(60-93)

Sigma-70 region 2 (Sigma70_r2)

(125-194)

Sigma-70 region 3 (Sigma70_r3)

(204-279)

Sigma-70, region 4 (Sigma70_r4)

(293-345)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.434

82.961

0.36