Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG279_RS24995 Genome accession   NZ_CP108565
Coordinates   5657746..5659479 (-) Length   577 a.a.
NCBI ID   WP_147963317.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01201     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5652746..5664479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG279_RS24985 (OG279_25015) rpoS 5654670..5655746 (+) 1077 WP_327436366.1 RNA polymerase sigma factor Regulator
  OG279_RS24990 (OG279_25020) - 5655824..5657746 (-) 1923 WP_147963318.1 ABC transporter ATP-binding protein -
  OG279_RS24995 (OG279_25025) rcrP 5657746..5659479 (-) 1734 WP_147963317.1 ABC transporter ATP-binding protein Regulator
  OG279_RS25000 (OG279_25030) - 5659618..5661063 (-) 1446 WP_306104287.1 FGGY family carbohydrate kinase -
  OG279_RS25005 (OG279_25035) - 5661146..5661448 (-) 303 WP_147963316.1 YtxH domain-containing protein -
  OG279_RS25025 (OG279_25055) - 5662171..5663403 (+) 1233 WP_327436031.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62345.44 Da        Isoelectric Point: 5.5414

>NTDB_id=663090 OG279_RS24995 WP_147963317.1 5657746..5659479(-) (rcrP) [Streptomyces sp. NBC_01201]
MLIKLLRTYLGPYRRPIVLLVLLQLLQTCASLYLPSLNADIIDNGVVKGDTGYILEFGGVMIAVSVVQIVCNIGAVYYGA
RTASALGRDVRASVFARVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGVIMALGQDVPLSAV
LLAVLPVLGVSVSLIVKRMRPLFRTMQVRLDAVNRVLREQITGNRVIRAFIRDGYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDGGGMQIGALTAFLAYLMQIVMSVMMATFMFIMVPRAEVCAERIQEVLETESSVVP
PTAPVTKVLKHGHLEIRGAEFRFPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGEVLVDGADVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEQLWHALEVAQAKNFVEGLEHGLDAPISQGGTNVSGGQRQRL
AIARTLVQEPEIYLFDDSFSALDYATDAALRGALSQETAGATVVIVAQRVSTIRDADRILVLDEGRVVGSGSHHELMEGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=663090 OG279_RS24995 WP_147963317.1 5657746..5659479(-) (rcrP) [Streptomyces sp. NBC_01201]
GTGCTCATAAAACTCCTGCGGACCTATCTGGGCCCGTACAGACGTCCCATCGTGCTGCTGGTGCTGCTCCAGCTCCTCCA
GACCTGCGCGAGCCTCTATCTGCCCAGCCTCAACGCGGACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGTTACA
TCCTGGAGTTCGGCGGCGTGATGATCGCCGTCAGCGTCGTCCAGATCGTCTGCAACATCGGGGCGGTCTACTACGGCGCC
CGGACCGCGTCCGCGCTCGGGCGCGACGTGCGGGCGTCGGTCTTCGCGCGGGTACAGTCCTTCTCCGCACGCGAGGTGGG
GCGGTTCGGGGCCCCTTCGCTGATCACCCGGACGACCAACGACGTGCAGCAGGTCCAGATGCTCGTCCTGATGGCGTTCA
CCCTGATGGTCTCGGCGCCCATCATGTGTGTCGGCGGCGTCATCATGGCGCTCGGCCAGGACGTCCCGTTGTCGGCGGTG
CTGCTGGCCGTACTGCCCGTCCTCGGCGTCTCGGTGAGCCTGATCGTCAAGAGGATGCGGCCGCTGTTCCGCACGATGCA
GGTACGGCTGGACGCCGTCAACCGGGTGCTGCGCGAACAGATCACCGGTAACCGCGTCATCCGCGCCTTCATCCGTGACG
GTTACGAGGAGGAGCGCTTCCGGGGCGCCAACACCGAGCTGACGGACGTCGCGCTGTCGACGGGGCGGCTGATGGCGCTC
ATGTTCCCGACGGTGATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTCTGGTTCGGGGCGCACCGCATCGACGGCGG
CGGGATGCAGATCGGGGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGTCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGGATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGGTGCCG
CCCACCGCTCCGGTGACGAAGGTGCTGAAGCACGGCCATCTGGAGATACGGGGCGCGGAGTTCCGTTTCCCGGGTGCCGA
GGAGCCGGTGCTGCGCTCGGTCGATCTCGTGGCCCGGCCCGGGGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTGGTACCGCGGCTGTTCGACGCGACGGACGGCGAGGTGCTGGTCGACGGTGCGGACGTGAGG
ACGCTGGATCCCGTCCTGCTGGCGAAGACCGTGAGTCTGGTACCGCAGAAGCCGTACCTGTTCTCGGGGACGGTCGCGAC
GAATCTGCGCTACGGCAATCCGGACGCCACCGACGAGCAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCGAAGAACTTCG
TGGAGGGGCTGGAGCACGGCCTCGACGCGCCGATCTCGCAGGGCGGCACGAATGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGGAGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCCCTGGACTACGCGACGGA
CGCCGCGCTGCGCGGCGCGCTGTCCCAGGAGACGGCGGGGGCGACCGTGGTGATCGTGGCCCAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGATCGGGCAGCCATCACGAGCTGATGGAAGGCAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.652

100

0.411