Detailed information NTG0066304

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: POS17_RS08870
• Genome accession: NZ_AP014627
• Coordinates: 1958517..1960733 (+)
• Length: 738 a.a.
• NCBI ID: WP_060838226.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Os17
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1953517..1965733

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
POS17_RS08845 (POS17_1784)	-	1954643..1955302 (+)	660	WP_060838221.1	transglutaminase family protein	-
POS17_RS08850 (POS17_1785)	-	1955345..1955968 (+)	624	WP_060838222.1	glutathione S-transferase	-
POS17_RS08855 (POS17_1786)	-	1956100..1957032 (+)	933	WP_060838223.1	ABC transporter ATP-binding protein	-
POS17_RS08860 (POS17_1787)	-	1957029..1957808 (+)	780	WP_060838224.1	ABC transporter permease	-
POS17_RS08865 (POS17_1788)	-	1957862..1958377 (-)	516	WP_060838225.1	DUF2062 domain-containing protein	-
POS17_RS08870 (POS17_1789)	comA	1958517..1960733 (+)	2217	WP_060838226.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
POS17_RS08875 (POS17_1790)	exbB	1960851..1961486 (+)	636	WP_016968261.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
POS17_RS08880 (POS17_1791)	-	1961483..1961911 (+)	429	WP_060838227.1	biopolymer transporter ExbD	-
POS17_RS08885 (POS17_1792)	lpxK	1961911..1962921 (+)	1011	WP_060838228.1	tetraacyldisaccharide 4'-kinase	-
POS17_RS08890 (POS17_1793)	-	1962945..1963130 (+)	186	WP_011060103.1	Trm112 family protein	-
POS17_RS08895 (POS17_1794)	kdsB	1963127..1963891 (+)	765	WP_060838229.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
POS17_RS08900 (POS17_1795)	-	1963891..1964355 (+)	465	WP_060838230.1	low molecular weight protein-tyrosine-phosphatase	-
POS17_RS08905 (POS17_1796)	murB	1964352..1965371 (+)	1020	WP_060838231.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 738 a.a.
• Molecular weight: 80807.18 Da
• Isoelectric Point: 11.6750

>NTDB_id=66304 POS17_RS08870 WP_060838226.1 1958517..1960733(+) (comA) [Pseudomonas sp. Os17]
MGTGLLALAAGLLALGFLPVLPPVWLLLALAVVGLMLLPFRTHPVAFFLFGFAWACVSGHWALNDRLAPGLEGQTRWLEG
QVSGLPEQGQGVVRFELQGAQARRERLPRRIRLAWRDAPPLHSGERWRLAVTLRRPAGLLNVQGFDHQAWLLARRIGATG
TVKAGQLLRPARLAWREGLRQRLLGVEAQGRGAGLAALVMGDGSGLTRQDWQVLQDTGTVHLMVISGQHISLLAGVIYLG
VAGLARWGIWPERLPWLPWACALAFLGALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGVWRPWLLALNAVLLFEPL
ASLQPGFWLSFAAVAILLLTFAGRLGRWRWWQAWSRAQWLIAIGLLPPLLALGLPISFSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPHVGEGLLWLAGGLLDGLFRLLGMIAGAWPAWVAPLLPWWLWGLSALGALLLLLPSGVPLRVLGWPLLLLAI
WPPERVLPEGEVEVWQLDVGQGLSMLLRTRDHAMLYDAGARVGDFDLGERVVLPSLRKLGIRQLDLMLLSHADNDHAGGA
LAVWRGIDVARVRSGEPGALPDALQAQPCESGLGWQWNGVRFRLWQWPAAADGNQASCVLQVEARGERLLLTGDIDVHAE
RALLASPLAVHTHWLQAPHHGSRTSSSMALLQRLRPTAVLISRGRGNAFGHPHAEVLARYRRLGVAVHDSADQGALKLRL
GTFGPVQSLRAQRRFWRD

Nucleotide

• Length: 2217 bp

>NTDB_id=66304 POS17_RS08870 WP_060838226.1 1958517..1960733(+) (comA) [Pseudomonas sp. Os17]
ATGGGGACGGGGTTGCTGGCACTGGCCGCGGGGCTGCTGGCGCTGGGTTTTCTACCGGTGTTGCCGCCGGTCTGGCTGTT
GCTGGCGTTGGCGGTCGTGGGGCTGATGCTGCTGCCGTTTCGTACACATCCCGTGGCATTTTTTCTCTTCGGTTTCGCCT
GGGCTTGCGTTTCCGGGCATTGGGCCCTGAATGATCGCCTGGCTCCTGGCCTGGAAGGACAGACCCGCTGGCTGGAGGGG
CAGGTCAGTGGTTTGCCGGAGCAGGGCCAGGGCGTGGTGCGCTTTGAACTGCAGGGTGCCCAGGCGCGACGCGAGCGTCT
GCCGCGGCGGATACGCCTGGCCTGGCGCGACGCCCCGCCGCTGCACAGTGGCGAGCGCTGGCGCCTGGCGGTCACGTTGC
GGCGTCCTGCCGGGCTGCTCAATGTCCAGGGCTTCGATCACCAGGCCTGGCTGCTGGCGCGGCGCATCGGGGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTCAGGCCCGCCCGCCTGGCCTGGCGCGAGGGCCTGCGCCAGCGCCTGCTGGGTGTCGA
GGCACAAGGGCGTGGCGCCGGGCTGGCGGCACTGGTGATGGGCGACGGCTCGGGGCTGACGCGCCAGGACTGGCAGGTGC
TGCAGGACACCGGCACGGTTCACCTGATGGTGATTTCCGGTCAGCACATCAGCCTGCTGGCCGGGGTGATCTACCTCGGG
GTGGCCGGGCTTGCCCGCTGGGGCATCTGGCCCGAGCGCCTGCCATGGTTGCCCTGGGCCTGTGCCCTGGCCTTTCTCGG
GGCTCTGGGCTACGGCTTGCTGGCCGGGTTCGATGTGCCGGTGCAACGGGCTTGCGTGATGGTCGCCCTGGTCCTGCTAT
GGCGGCTGCGCTTTCGCCATCTGGGCGTCTGGCGACCCTGGCTGCTGGCGTTGAATGCGGTGTTGCTGTTCGAGCCCCTG
GCCAGTCTGCAGCCGGGATTCTGGCTGTCCTTTGCCGCGGTGGCGATCCTGCTTCTTACCTTCGCCGGGCGCCTGGGGCG
CTGGCGCTGGTGGCAGGCCTGGAGCCGTGCGCAGTGGCTGATCGCCATTGGCTTGCTGCCGCCGCTGCTGGCCCTGGGGT
TGCCCATCAGTTTCAGCGGTCCCCTGGCCAATCTGCTGGCGGTGCCGTGGATCAGTCTGCTGGTGCTGCCGCCGGCCCTG
CTGGGTTGTCTGCTGCTGCCGGTGCCACATGTGGGCGAGGGGTTGCTGTGGCTGGCCGGGGGGCTGCTGGATGGGCTGTT
CCGCCTGTTGGGGATGATCGCCGGTGCCTGGCCGGCCTGGGTGGCGCCGTTGCTGCCCTGGTGGCTTTGGGGGCTCAGTG
CCCTGGGGGCCTTGCTGTTGCTCCTGCCCAGCGGTGTACCGCTGCGGGTGCTGGGGTGGCCGCTGTTGCTATTGGCCATC
TGGCCGCCCGAGCGAGTGCTGCCCGAGGGTGAGGTGGAGGTCTGGCAACTGGACGTGGGGCAGGGGCTGTCGATGCTCCT
GCGCACCCGCGATCATGCCATGCTCTACGATGCCGGCGCCCGGGTGGGGGATTTCGATCTCGGCGAGCGGGTGGTGCTGC
CCAGCTTGCGCAAGCTGGGGATCAGGCAGCTGGACCTGATGCTGCTCAGTCATGCCGACAACGATCATGCCGGTGGCGCC
CTGGCGGTCTGGCGCGGAATCGATGTGGCCCGGGTGCGCAGCGGCGAGCCCGGGGCATTGCCCGACGCCCTGCAAGCACA
GCCTTGCGAGTCGGGCCTGGGCTGGCAATGGAATGGGGTGCGCTTTCGGCTGTGGCAATGGCCGGCGGCGGCCGATGGCA
ACCAGGCTTCCTGCGTGTTGCAGGTCGAGGCTCGGGGCGAGCGGCTGTTGCTCACCGGCGACATCGACGTGCATGCCGAA
CGGGCATTGCTCGCCAGTCCGCTGGCGGTTCACACCCACTGGTTGCAGGCCCCCCATCATGGCAGTCGCACTTCTTCGTC
CATGGCCCTGCTGCAACGCCTGCGACCGACCGCGGTGCTGATTTCCCGCGGGCGGGGCAATGCCTTCGGTCATCCCCATG
CCGAGGTACTGGCGCGCTATCGACGGCTGGGGGTGGCTGTGCATGACAGCGCCGATCAAGGAGCGCTGAAACTGCGCCTG
GGGACTTTCGGGCCCGTGCAAAGCCTGCGCGCGCAGCGGCGTTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-678)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.866	96.748	0.618
comA	Ralstonia pseudosolanacearum GMI1000	32.854	100	0.371