NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG573_RS07625	Genome accession	NZ_CP108557
Coordinates	1636292..1636963 (-)	Length	223 a.a.
NCBI ID	WP_323179072.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01205
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1631292..1641963

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG573_RS07615 (OG573_07615)	-	1633795..1634739 (+)	945	WP_327283422.1	hypothetical protein	-
OG573_RS07620 (OG573_07620)	clpX	1634852..1636138 (-)	1287	WP_030297265.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG573_RS07625 (OG573_07625)	clpP	1636292..1636963 (-)	672	WP_323179072.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG573_RS07630 (OG573_07630)	clpP	1637050..1637667 (-)	618	WP_327283423.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG573_RS07635 (OG573_07635)	tig	1638000..1639382 (-)	1383	WP_327283424.1	trigger factor	-
OG573_RS07650 (OG573_07650)	-	1639964..1640475 (+)	512	Protein_1504	replication initiator	-
OG573_RS07655 (OG573_07655)	-	1640468..1640668 (+)	201	WP_327283425.1	excisionase family DNA-binding protein	-
OG573_RS07660 (OG573_07660)	-	1640910..1641194 (+)	285	Protein_1506	site-specific integrase	-
OG573_RS07665 (OG573_07665)	-	1641327..1641686 (+)	360	Protein_1507	NUDIX domain-containing protein	-

Sequence

Protein

Download Length: 223 a.a. Molecular weight: 24586.05 Da Isoelectric Point: 4.9265

                                >NTDB_id=662972 OG573_RS07625 WP_323179072.1 1636292..1636963(-) (clpP) [Streptomyces sp. NBC_01205]

MVNTQMHMNNLSPASGLYTGAPVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD

PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLS

DLEIAAREILRMRDQLETMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIVSTRKNSH

Nucleotide

Download Length: 672 bp

                                >NTDB_id=662972 OG573_RS07625 WP_323179072.1 1636292..1636963(-) (clpP) [Streptomyces sp. NBC_01205]

ATGGTGAACACCCAGATGCACATGAACAACCTCTCTCCCGCGAGCGGCCTCTACACCGGCGCGCCGGTGGACAACCGCTA

CGTCGTCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG

TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC

CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTGACGGCTATCTACGACACGATGCA

GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTGGCCGCAGGCACCC

CCGGCAAGCGCATGGCGCTGCCGAACGCCCGTGTGCTGATCCACCAGCCGTCCGGCGGCACCGGCCGCGAGCAGCTCTCC

GACCTGGAGATCGCGGCCAGGGAGATCCTGCGCATGCGTGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACCACGCC

GATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACC

AGATCGTCTCGACCCGCAAGAACTCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	52.632	85.202	0.448
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.468	84.305	0.417
clpP	Streptococcus thermophilus LMD-9	45.876	86.996	0.399
clpP	Streptococcus pyogenes JRS4	45.876	86.996	0.399
clpP	Streptococcus pyogenes MGAS315	45.876	86.996	0.399
clpP	Streptococcus thermophilus LMG 18311	45.876	86.996	0.399
clpP	Streptococcus mutans UA159	46.316	85.202	0.395
clpP	Lactococcus lactis subsp. cremoris KW2	46.073	85.65	0.395
clpP	Streptococcus pneumoniae D39	45.55	85.65	0.39
clpP	Streptococcus pneumoniae TIGR4	45.55	85.65	0.39
clpP	Streptococcus pneumoniae R6	45.55	85.65	0.39
clpP	Streptococcus pneumoniae Rx1	45.55	85.65	0.39
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	45.026	85.65	0.386

Detailed information NTG0662972