Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MNG38_RS02350 Genome accession   NZ_CP093289
Coordinates   424472..424921 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain H2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 419472..429921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNG38_RS02315 (MNG38_02315) yckA 419623..420303 (-) 681 WP_024572176.1 amino acid ABC transporter permease -
  MNG38_RS02320 (MNG38_02320) yckB 420313..421176 (-) 864 WP_029317191.1 transporter substrate-binding domain-containing protein -
  MNG38_RS02325 (MNG38_02325) - 421337..421534 (+) 198 WP_128992271.1 hypothetical protein -
  MNG38_RS02330 (MNG38_02330) yckC 421554..422009 (+) 456 WP_048654748.1 RDD family protein -
  MNG38_RS02335 (MNG38_02335) yckD 422091..422423 (+) 333 WP_015252849.1 YckD family protein -
  MNG38_RS02340 (MNG38_02340) bglC 422577..424010 (+) 1434 WP_048654749.1 6-phospho-beta-glucosidase -
  MNG38_RS02345 (MNG38_02345) nin/comJ 424047..424445 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  MNG38_RS02350 (MNG38_02350) nucA/comI 424472..424921 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  MNG38_RS02355 (MNG38_02355) tlpC 425089..426810 (-) 1722 WP_048654750.1 methyl-accepting chemotaxis protein TlpC -
  MNG38_RS02360 (MNG38_02360) hxlB 426921..427478 (-) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  MNG38_RS02365 (MNG38_02365) hxlA 427484..428116 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  MNG38_RS02370 (MNG38_02370) hxlR 428345..428707 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=662955 MNG38_RS02350 WP_003234608.1 424472..424921(-) (nucA/comI) [Bacillus subtilis strain H2]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=662955 MNG38_RS02350 WP_003234608.1 424472..424921(-) (nucA/comI) [Bacillus subtilis strain H2]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98