Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG457_RS30240 Genome accession   NZ_CP108554
Coordinates   6564344..6565381 (+) Length   345 a.a.
NCBI ID   WP_327388627.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01207     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 6559344..6570381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG457_RS30220 (OG457_30225) - 6560005..6560409 (+) 405 WP_327385498.1 hypothetical protein -
  OG457_RS30225 (OG457_30230) - 6560456..6562546 (+) 2091 WP_327385499.1 molybdopterin oxidoreductase family protein -
  OG457_RS30230 (OG457_30235) - 6562512..6563507 (-) 996 WP_327388626.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG457_RS30235 (OG457_30240) - 6563573..6564175 (-) 603 WP_327385500.1 hypothetical protein -
  OG457_RS30240 (OG457_30245) rpoS 6564344..6565381 (+) 1038 WP_327388627.1 RNA polymerase sigma factor Regulator
  OG457_RS30245 (OG457_30250) - 6565495..6566010 (-) 516 WP_327385501.1 GNAT family N-acetyltransferase -
  OG457_RS30250 (OG457_30255) rcrQ 6566096..6568018 (-) 1923 WP_327385502.1 ABC transporter ATP-binding protein Regulator
  OG457_RS30255 (OG457_30260) rcrP 6568015..6569748 (-) 1734 WP_327385503.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38737.29 Da        Isoelectric Point: 5.2566

>NTDB_id=662928 OG457_RS30240 WP_327388627.1 6564344..6565381(+) (rpoS) [Streptomyces sp. NBC_01207]
MTVNVSESSEAKAVDEEPEVLELIEPVPVPRRRSSGDSGGGAGPSADLFRQYLREIGRIPLLTAAEEVDLARRVEAGLFA
EEKLANTPDLDSQLALDLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKF
STYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERVLEVLRLAQEPVSL
HAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERI
RQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=662928 OG457_RS30240 WP_327388627.1 6564344..6565381(+) (rpoS) [Streptomyces sp. NBC_01207]
CTGACCGTGAACGTGAGCGAGTCCTCGGAGGCCAAGGCCGTGGACGAAGAGCCCGAGGTACTGGAGCTGATCGAGCCGGT
GCCCGTGCCGCGCAGGCGCAGCAGCGGCGACAGCGGAGGCGGAGCGGGCCCGTCCGCCGACCTGTTCCGCCAGTACCTCC
GCGAGATAGGCAGGATCCCGCTGCTCACCGCCGCCGAGGAGGTGGACCTCGCGCGCCGCGTCGAAGCCGGCCTGTTCGCC
GAGGAGAAACTCGCCAACACCCCCGACCTCGACTCCCAGCTCGCCCTCGACCTCGACAAGCTCGTCGTCATGGGACGGAT
GGCCAAACGCCGGCTCATCGAGTCGAACCTGCGGCTCGTCGTCTCCGTCGCCAAGCGGTACGTGGGCCGCGGACTCACCA
TGCTCGACCTCGTGCAGGAGGGGAACCTCGGGCTGATCCGCGCCGTCGAGAAGTTCGACTACGCCCGCGGGTACAAGTTC
TCCACCTACGCCACCTGGTGGATCCGCCAGGCGATGTCACGGGCCCTCGCCGACCAGGCCCGGACCATCCGGGTGCCCGT
CCACGTCGTCGAACTGATCAACCGGGTCGTCCGCGTACAGCGCCGGATGCTCCAGGAGCGCGGGTACGAGCCCACGGCCG
AAGAGGTGGCCGTCCACCTGGAGTTGACCCCCGAGCGGGTCCTGGAGGTGCTCCGCCTCGCCCAGGAACCGGTCTCCCTG
CACGCTCCGGTGGGTGAGGAGGACGACGTCGCGCTCGGCGACCTCATCGAGGACGGGGACGCCGCCTCGCCCGTGGAATC
GGCCGCCTTCTTCCTGCTGCGCGAGCACCTGGAAGCAGTCCTGTCGACGCTCGGCGAGCGCGAGCGCAAGGTCGTCCAGC
TGCGGTACGGCCTCGCTGACGGGCGGCCCCGCACCCTGGAGGAGATCGGACGGATCTTCGGCGTGACGCGCGAGCGGATC
CGGCAGATCGAGTCCAAGACCCTCAACAAGCTGCGCGACCACGCCTTCGCCGACCAGCTCCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(280-332)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(47-80)

Sigma-70 region 2 (Sigma70_r2)

(112-181)

Sigma-70 region 3 (Sigma70_r3)

(191-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.027

84.928

0.374