Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG457_RS30250 Genome accession   NZ_CP108554
Coordinates   6566096..6568018 (-) Length   640 a.a.
NCBI ID   WP_327385502.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01207     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6561096..6573018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG457_RS30230 (OG457_30235) - 6562512..6563507 (-) 996 WP_327388626.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG457_RS30235 (OG457_30240) - 6563573..6564175 (-) 603 WP_327385500.1 hypothetical protein -
  OG457_RS30240 (OG457_30245) rpoS 6564344..6565381 (+) 1038 WP_327388627.1 RNA polymerase sigma factor Regulator
  OG457_RS30245 (OG457_30250) - 6565495..6566010 (-) 516 WP_327385501.1 GNAT family N-acetyltransferase -
  OG457_RS30250 (OG457_30255) rcrQ 6566096..6568018 (-) 1923 WP_327385502.1 ABC transporter ATP-binding protein Regulator
  OG457_RS30255 (OG457_30260) rcrP 6568015..6569748 (-) 1734 WP_327385503.1 ABC transporter ATP-binding protein Regulator
  OG457_RS30260 (OG457_30265) - 6569901..6571361 (-) 1461 WP_327385504.1 FGGY family carbohydrate kinase -
  OG457_RS30265 (OG457_30270) - 6571459..6571761 (-) 303 WP_030012123.1 hypothetical protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68867.42 Da        Isoelectric Point: 5.2929

>NTDB_id=662929 OG457_RS30250 WP_327385502.1 6566096..6568018(-) (rcrQ) [Streptomyces sp. NBC_01207]
MSGPGGRMMMGPAQRSMDFKGSGKRLLRQLAYDRAKIWGMVAAVVGSVGCAVVGPKILGEATDLVFAGIVGREMPAGTTK
QQALDGLRARGQDGMADMLAGTDFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLVMMFWISPLLALVALVTVPLSVFVAAKIGKKS
QPQFVAQWKATGALNAHIEEMYSGHSLVKVFGRQKESAAVFAEQNEALYRASFKSQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAPEQEPDAVVPERPEELRGQVTFDKV
AFRYEPDKPLIENLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRDGIGMVLQDTWL
FGGTIAQNIAYGASREVTRAEIEGAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSEPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLASGSAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=662929 OG457_RS30250 WP_327385502.1 6566096..6568018(-) (rcrQ) [Streptomyces sp. NBC_01207]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGACCGGCCCAGCGGTCCATGGACTTCAAGGGTTCGGGCAAGCGGCTGCT
GCGCCAGCTCGCGTACGACCGGGCCAAGATCTGGGGCATGGTCGCGGCCGTCGTCGGCAGCGTCGGCTGCGCGGTGGTGG
GCCCGAAGATCCTCGGTGAGGCCACCGACCTGGTGTTCGCCGGGATCGTCGGCCGGGAGATGCCGGCCGGGACCACCAAG
CAGCAGGCGTTGGACGGGCTGCGCGCCCGGGGCCAGGACGGCATGGCGGACATGCTCGCCGGTACCGACTTCACCCCGGG
GCAGGGCATCGACTTCGGCGCCGTCGGGGTCGTCGCGATCTGGGCGCTGGTGGTCTTCACCTTGGCCGGCCTGCTGATGC
TGGTCGCGACGCGGCTGTCGAACCACGTCATGAACGGCACCGTCTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGTTGAGCCGGGCCACGAACGACATAGACAACATCGG
CCAGACGCTCCAGCAGACGATGGGCCAGTTGCTGAACTCGCTGCTGACCATCGTCGGCGTGCTGGTGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTACCGCTGTCGGTCTTCGTCGCCGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGGCGACCGGCGCGCTCAACGCCCACATCGAGGAGATGTACTCGGGCCACAGCCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCCGTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCCTTCA
AGTCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATAGCCGTCGTC
GGCGGGCTCCGGGTCGCCTCCGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGCGTCGCCTCGGCGGAGCGGGTGTACGAGCTGCTGG
ACGCGCCGGAGCAGGAGCCGGACGCGGTGGTTCCGGAGCGTCCGGAGGAGCTGCGCGGTCAGGTCACCTTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCCCTCACGGTCGAGCCGGGCCAGACGGTCGCGATCGT
CGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCGCCC
TCGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCGACGGCATTGGCATGGTGCTGCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGCAGAACATCGCCTACGGTGCTTCGCGCGAGGTCACGCGCGCCGAGATCGAGGGGGCGGCGCG
GGCCGCCCACGCGGACCGGTTCATCCGCACCCTGCCGGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGGGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGAGCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTACTGATCCAGAAGGCGATGGCGCGCCTCGCGCACGGACGTACGTCCTTCGTGAT
CGCGCACCGGCTCTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGATCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCCTCGGGCAGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.032

97.188

0.389