Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG457_RS20640 Genome accession   NZ_CP108554
Coordinates   4577857..4579269 (+) Length   470 a.a.
NCBI ID   WP_327383940.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4572857..4584269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG457_RS20625 (OG457_20620) - 4573601..4574539 (-) 939 WP_327383937.1 Ppx/GppA phosphatase family protein -
  OG457_RS20630 (OG457_20625) - 4574603..4575475 (+) 873 WP_327383938.1 hypothetical protein -
  OG457_RS20635 (OG457_20630) - 4575506..4577275 (-) 1770 WP_327383939.1 hypothetical protein -
  OG457_RS20640 (OG457_20635) radA/sms 4577857..4579269 (+) 1413 WP_327383940.1 DNA repair protein RadA Machinery gene
  OG457_RS20645 (OG457_20640) disA 4579498..4580622 (+) 1125 WP_150258629.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG457_RS20650 (OG457_20645) - 4580777..4581526 (-) 750 WP_327383941.1 hypothetical protein -
  OG457_RS20655 (OG457_20650) - 4581750..4582367 (+) 618 WP_327383942.1 phosphatase PAP2 family protein -
  OG457_RS20660 (OG457_20655) - 4582391..4583380 (+) 990 WP_327383943.1 A/G-specific adenine glycosylase -
  OG457_RS20665 (OG457_20660) - 4583577..4584137 (+) 561 WP_327383944.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49248.46 Da        Isoelectric Point: 8.0042

>NTDB_id=662902 OG457_RS20640 WP_327383940.1 4577857..4579269(+) (radA/sms) [Streptomyces sp. NBC_01207]
MAARTARSSAKDRPSYRCTDCGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSTAALPIAQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSA
VLGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVIEVADMGDALRVLPRGRSRTPAKERSAE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=662902 OG457_RS20640 WP_327383940.1 4577857..4579269(+) (radA/sms) [Streptomyces sp. NBC_01207]
ATGGCTGCCCGCACCGCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGCACCGACTGCGGCTGGACGACCGCAAA
GTGGCTCGGCCGCTGTCCCGAATGCCAGGCCTGGGGCACCGTCGAGGAAATGGGCGCGCCCGCCGTGCGGACCACCGCCG
CCGGCCGGGTCTCGACCGCCGCCCTGCCGATCGCGCAGGTCGACGGCCGGACCGCGACCGCCCGCAGCACCGGCGTGGAC
GAGCTGGACCGCGTCCTCGGCGGCGGGCTCGTGCCCGGCGCCGTCGTGCTGCTCGCCGGCGAGCCCGGCGTCGGCAAGTC
GACCCTGCTGCTGGACGTCGCGGCGAAGGCGGCCAGTGACGAGCACCGCACGCTGTACGTGACGGGCGAGGAGTCGGCCA
GCCAGGTGCGACTGCGGGCCGACCGGATCAACGCCCTCAGCGATCACCTCTACCTCGCCGCCGAAACCGACCTGTCCGCC
GTCCTCGGCCATCTCGACGCCGTGAAGCCGTCCCTGCTGATCCTGGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGA
CGGTGCGCCCGGCGGCATGGCCCAGGTGCGCGAGGTGGCCGGAGCACTGATCCGCGCCTCCAAGGAGCGCGGGATGGCCA
CCCTCCTCGTGGGCCACGTGACCAAGGACGGAGCCATCGCCGGTCCCCGACTGCTGGAGCACCTCGTCGACGTGGTGTTG
AGCTTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGCATCAAGAACCGGTACGGGGCCACCGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGGGCCGAGGCCG
TTCCGGGCACCTGCCTGACGGTGACCCTGGAGGGGAAGCGTCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCC
CAGATCCCCTCCCCCCGGCGCACGACCTCGGGCCTGGAGACCTCGCGCGTGTCGATGATGCTGGCGGTGTTGGAGCAGCG
CGGCCGGATCACGGCGCTCGGCAAGCGCGACATCTACAGCGCCACGGTGGGCGGGGTGAAGCTCACCGAGCCGGCCGCCG
ACCTGGCGATCGCGCTCGCGCTGGCCTCCGCCGCCAGTGACGTCCCGCTGCCGAAGAACCTCGTCGCGATCGGTGAGGTC
GGCCTGGCCGGCGAGGTGCGGCGGGTGACCGGCGTGCAGCGGCGGCTCGCGGAGGCGCACCGACTGGGATTCACGCACGC
GCTGGTTCCGGCGGATCCGGGGAAGGTGCCGGCGGGGATGAAGGTCATCGAGGTGGCCGACATGGGCGACGCGCTACGGG
TGTTGCCGCGCGGCCGCTCCCGTACGCCGGCCAAGGAGCGGTCCGCGGAGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-224)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

96.383

0.426
  radA Streptococcus mitis SK321

43.077

96.809

0.417
  radA Streptococcus mitis NCTC 12261

43.077

96.809

0.417
  radA Streptococcus pneumoniae Rx1

43.142

96.17

0.415
  radA Streptococcus pneumoniae TIGR4

43.142

96.17

0.415
  radA Streptococcus pneumoniae D39

43.142

96.17

0.415
  radA Streptococcus pneumoniae R6

43.142

96.17

0.415