Detailed information NTG0662897

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MN553_RS23030
• Genome accession: NZ_CP093271
• Coordinates: 4861460..4862257 (+)
• Length: 265 a.a.
• NCBI ID: WP_049593864.1
• Uniprot ID: -
• Organism: Klebsiella oxytoca strain C-21-18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4856460..4867257

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MN553_RS22995 (MN553_22995)	gspH	4856598..4857110 (+)	513	WP_049593869.1	type II secretion system minor pseudopilin GspH	-
MN553_RS23000 (MN553_23000)	gspI	4857107..4857472 (+)	366	WP_004110668.1	type II secretion system minor pseudopilin GspI	-
MN553_RS23005 (MN553_23005)	gspJ	4857469..4858065 (+)	597	WP_004107987.1	type II secretion system minor pseudopilin GspJ	-
MN553_RS23010 (MN553_23010)	gspK	4858062..4859042 (+)	981	WP_049593868.1	type II secretion system minor pseudopilin GspK	-
MN553_RS23015 (MN553_23015)	gspL	4859035..4860231 (+)	1197	WP_049593867.1	type II secretion system protein GspL	-
MN553_RS23020 (MN553_23020)	-	4860224..4860709 (+)	486	WP_049593866.1	type II secretion system protein M	-
MN553_RS23025 (MN553_23025)	-	4860699..4861457 (+)	759	WP_049593865.1	type II secretion system protein N	-
MN553_RS23030 (MN553_23030)	pilD	4861460..4862257 (+)	798	WP_049593864.1	A24 family peptidase	Machinery gene
MN553_RS23035 (MN553_23035)	hrpB	4862354..4864783 (-)	2430	WP_049593863.1	ATP-dependent helicase HrpB	-
MN553_RS23040 (MN553_23040)	thpR	4864856..4865392 (+)	537	WP_049593862.1	RNA 2',3'-cyclic phosphodiesterase	-
MN553_RS23045 (MN553_23045)	sfsA	4865392..4866108 (+)	717	WP_004108004.1	DNA/RNA nuclease SfsA	-
MN553_RS23050 (MN553_23050)	dksA	4866273..4866728 (+)	456	WP_004098689.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29170.98 Da
• Isoelectric Point: 8.3391

>NTDB_id=662897 MN553_RS23030 WP_049593864.1 4861460..4862257(+) (pilD) [Klebsiella oxytoca strain C-21-18]
MENIALLPEFAAQFPLIWGGFLFLSGLAFGSFFNVVIHRLPLMMEYAEAVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
KGRSRCCGRPISRRYPLMELATGALFMLVGYLIPAGMPLLGGLILLSLLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLT
DLFAPLAEAVVGAMAGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQALPHTLLLASASGLIWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWGQV

Nucleotide

• Length: 798 bp

>NTDB_id=662897 MN553_RS23030 WP_049593864.1 4861460..4862257(+) (pilD) [Klebsiella oxytoca strain C-21-18]
GTGGAAAACATCGCATTGTTACCCGAGTTCGCCGCGCAATTCCCGTTAATCTGGGGCGGTTTTTTATTCTTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAGTACGCAGAGGCAGTGAATCTCTGCC
TCCCCGCATCGTTCTGTCCGCAGTGCCGTCAGCCCATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AAGGGGCGTTCGCGCTGCTGCGGGCGACCGATTTCACGTCGCTATCCGCTGATGGAGCTGGCGACCGGCGCGCTGTTTAT
GCTGGTCGGGTACCTGATCCCTGCGGGCATGCCGCTGCTGGGCGGGTTAATTTTATTGTCGCTGCTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACTCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTACC
GATCTCTTCGCGCCGCTGGCGGAGGCGGTCGTTGGCGCGATGGCCGGGTATCTATCGCTGTGGTCAGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGTGATTTCAAGCTGCTGGCGGCGCTCGGCGCGTGGCTCGGCTGGC
AGGCGCTGCCGCATACGCTGCTGCTGGCTTCCGCCAGCGGCCTGATCTGGACGCTGCTGCAGCGCCTGGTAACCCGTCGC
TCGCTCGAACAGCCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGGGCCAGGTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-110)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.425	98.491	0.487
pilD	Vibrio campbellii strain DS40M4	43.841	100	0.457
pilD	Neisseria gonorrhoeae MS11	47.826	95.472	0.457
pilD	Acinetobacter nosocomialis M2	45.174	97.736	0.442
pilD	Acinetobacter baumannii D1279779	44.788	97.736	0.438