Detailed information NTG0066275

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PCAU_RS26295
• Genome accession: NZ_AP014623
• Coordinates: 5811261..5812589 (+)
• Length: 442 a.a.
• NCBI ID: WP_096375493.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain StFRB508
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5806261..5817589

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCAU_RS26275 (PCAU_5209)	pgeF	5807749..5808474 (-)	726	WP_096375491.1	peptidoglycan editing factor PgeF	-
PCAU_RS26280 (PCAU_5210)	rluD	5808471..5809433 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PCAU_RS26285 (PCAU_5211)	-	5809586..5810608 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
PCAU_RS26290 (PCAU_5212)	-	5810743..5810976 (+)	234	WP_096375492.1	PP0621 family protein	-
PCAU_RS26295 (PCAU_5213)	pilR	5811261..5812589 (+)	1329	WP_096375493.1	sigma-54-dependent transcriptional regulator	Regulator
PCAU_RS26300 (PCAU_5214)	thiO	5812586..5813686 (-)	1101	WP_096375494.1	glycine oxidase ThiO	-
PCAU_RS26305 (PCAU_5215)	-	5813741..5814142 (-)	402	WP_038575642.1	type IV pilin protein	-
PCAU_RS26310 (PCAU_5216)	-	5814156..5817227 (-)	3072	WP_096375495.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48676.99 Da
• Isoelectric Point: 7.9880

>NTDB_id=66275 PCAU_RS26295 WP_096375493.1 5811261..5812589(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain StFRB508]
MGPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVALARLRELLNGALPGSTPANPATGPLLGDSTAMHKLRVQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVNAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLCLTPNSAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=66275 PCAU_RS26295 WP_096375493.1 5811261..5812589(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain StFRB508]
ATGGGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGCAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGTACGGGTCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAACTGTTGAATGGCGCCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TGGGCGATTCGACCGCCATGCACAAACTGCGCGTGCAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCGATCCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGAGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAGGTGAATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGTC
TGAACGTAATCGAGTTGGCGGTGCCACCGCTAAGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGATC
TATGCCTGACGCCCAATAGCGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.667	100	0.679
pilR	Acinetobacter baumannii strain A118	44.444	100	0.462