Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   MMZ11_RS08480 Genome accession   NZ_CP093222
Coordinates   1790987..1791562 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CICARIA     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785987..1796562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ11_RS08440 (MMZ11_08440) - 1786668..1786883 (+) 216 WP_001831694.1 NINE protein -
  MMZ11_RS08445 (MMZ11_08445) - 1787534..1787692 (+) 159 WP_001829449.1 hypothetical protein -
  MMZ11_RS08450 (MMZ11_08450) - 1787762..1788274 (-) 513 WP_224785136.1 LysE family transporter -
  MMZ11_RS08455 (MMZ11_08455) - 1788382..1788723 (-) 342 WP_002456621.1 fatty acid desaturase -
  MMZ11_RS08460 (MMZ11_08460) - 1788940..1789187 (-) 248 Protein_1619 recombinase -
  MMZ11_RS12355 - 1789389..1789640 (-) 252 WP_338328049.1 plasmid recombination protein -
  MMZ11_RS12360 - 1789722..1789928 (-) 207 WP_338328055.1 plasmid recombination protein -
  MMZ11_RS08480 (MMZ11_08480) comK/comK1 1790987..1791562 (-) 576 WP_001829272.1 competence protein ComK Regulator
  MMZ11_RS08485 (MMZ11_08485) - 1791777..1791995 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  MMZ11_RS08490 (MMZ11_08490) - 1792073..1793059 (-) 987 WP_001829269.1 lipoate--protein ligase -
  MMZ11_RS08495 (MMZ11_08495) - 1793264..1793449 (+) 186 WP_001829339.1 DUF2187 family protein -
  MMZ11_RS08500 (MMZ11_08500) - 1793455..1794057 (+) 603 WP_001829312.1 CPBP family glutamic-type intramembrane protease -
  MMZ11_RS08505 (MMZ11_08505) - 1794160..1795665 (-) 1506 WP_001829277.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=662716 MMZ11_RS08480 WP_001829272.1 1790987..1791562(-) (comK/comK1) [Staphylococcus epidermidis strain CICARIA]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=662716 MMZ11_RS08480 WP_001829272.1 1790987..1791562(-) (comK/comK1) [Staphylococcus epidermidis strain CICARIA]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
AACAAATGGTACTGAAATTATCAGATTTGATCAAACTCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCTTCTCTAAATATTTTCGAGGCGCTCTCACGCTACTCCCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743