Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG722_RS25635 Genome accession   NZ_CP108545
Coordinates   5829717..5830397 (-) Length   226 a.a.
NCBI ID   WP_147961690.1    Uniprot ID   A0ABY9JJ10
Organism   Streptomyces sp. NBC_01212     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5824717..5835397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG722_RS25615 (OG722_25615) - 5825378..5826610 (+) 1233 WP_327380131.1 histidine kinase -
  OG722_RS25620 (OG722_25620) - 5826607..5827263 (+) 657 WP_306104326.1 response regulator transcription factor -
  OG722_RS25625 (OG722_25625) - 5827302..5828510 (-) 1209 WP_327380132.1 acyltransferase -
  OG722_RS25630 (OG722_25630) - 5828507..5829550 (-) 1044 WP_327380133.1 alpha/beta hydrolase -
  OG722_RS25635 (OG722_25635) vraR 5829717..5830397 (-) 681 WP_147961690.1 response regulator transcription factor Regulator
  OG722_RS25640 (OG722_25640) - 5830411..5831742 (-) 1332 WP_306104327.1 sensor histidine kinase -
  OG722_RS25645 (OG722_25645) - 5831880..5832806 (-) 927 WP_147963255.1 DUF4429 domain-containing protein -
  OG722_RS25650 (OG722_25650) - 5832924..5834135 (-) 1212 WP_147963254.1 alpha/beta hydrolase -
  OG722_RS25655 (OG722_25655) - 5834372..5835040 (-) 669 WP_147963253.1 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24097.00 Da        Isoelectric Point: 6.7385

>NTDB_id=662697 OG722_RS25635 WP_147961690.1 5829717..5830397(-) (vraR) [Streptomyces sp. NBC_01212]
MTIRVIIVDDQAMVRAGFAALLSAQSDIDVVGEAPDGRKGVEVSRSVHPDVVLMDVRMPEMDGLAAARELLAPPAGVVHR
PKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRIVAAGDALLAPSVTRRLIADFARRKPAAPSGGPALRLNG
LTPREREVLELIARGLSNQEIAARLVLAEQTVKTHIGRVLAKLALRDRAQAVIFAYESGLVTPGEQ

Nucleotide


Download         Length: 681 bp        

>NTDB_id=662697 OG722_RS25635 WP_147961690.1 5829717..5830397(-) (vraR) [Streptomyces sp. NBC_01212]
GTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCCGGTTTCGCGGCGCTGCTGTCGGCGCAGAGCGA
CATCGACGTGGTGGGTGAGGCCCCGGACGGACGCAAGGGCGTCGAGGTCAGCAGGTCGGTGCATCCGGATGTCGTCCTGA
TGGACGTCAGGATGCCGGAGATGGACGGACTGGCCGCCGCCCGGGAGCTGTTGGCCCCGCCGGCGGGTGTGGTCCACCGG
CCGAAGGTCCTGATGCTCACCACGTTCGACGTCGACGACTACGTCTACGAGGCGCTGCGCGCGGGGGCGTCCGGGTTCCT
GCTGAAGGACGCCCCGCCGGCGGATCTGATCTCGGCGGTGCGGATCGTGGCGGCGGGGGACGCGCTGCTCGCGCCGTCCG
TGACCCGGCGGCTCATCGCGGACTTCGCGCGCCGGAAACCGGCGGCGCCGTCCGGCGGGCCCGCGCTGCGGCTGAACGGC
CTGACACCGCGCGAGCGGGAGGTACTGGAGCTGATCGCCCGGGGCCTGTCGAACCAGGAGATCGCGGCTCGGCTGGTGCT
GGCCGAGCAGACGGTGAAGACCCACATCGGCCGGGTGCTGGCCAAGCTCGCGCTCCGGGACCGGGCGCAGGCGGTGATCT
TCGCGTACGAGTCGGGGCTGGTGACTCCCGGGGAGCAGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(161-215)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.271

97.788

0.394
  degU Bacillus subtilis subsp. subtilis str. 168

36.681

100

0.372