Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   OG722_RS24365 Genome accession   NZ_CP108545
Coordinates   5540430..5541728 (+) Length   432 a.a.
NCBI ID   WP_147963424.1    Uniprot ID   A0ABY9JIG5
Organism   Streptomyces sp. NBC_01212     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5535430..5546728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG722_RS24330 (OG722_24335) - 5535803..5535997 (+) 195 WP_014156281.1 hypothetical protein -
  OG722_RS24335 (OG722_24340) - 5536289..5536636 (+) 348 WP_147963426.1 DUF1330 domain-containing protein -
  OG722_RS24350 (OG722_24355) tig 5537230..5538630 (+) 1401 WP_147963425.1 trigger factor -
  OG722_RS24355 (OG722_24360) - 5538917..5539522 (+) 606 WP_030122563.1 ATP-dependent Clp protease proteolytic subunit -
  OG722_RS24360 (OG722_24365) clpP 5539590..5540273 (+) 684 WP_030122564.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG722_RS24365 (OG722_24370) clpX 5540430..5541728 (+) 1299 WP_147963424.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG722_RS24370 (OG722_24375) - 5541808..5542209 (+) 402 WP_306104251.1 type II toxin-antitoxin system RelE/ParE family toxin -
  OG722_RS24375 (OG722_24380) - 5542206..5542511 (+) 306 WP_147963423.1 helix-turn-helix transcriptional regulator -
  OG722_RS24380 (OG722_24385) - 5542649..5543659 (-) 1011 WP_147963422.1 hypothetical protein -
  OG722_RS24385 (OG722_24390) - 5543796..5546417 (+) 2622 WP_327380075.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 47373.20 Da        Isoelectric Point: 4.8277

>NTDB_id=662695 OG722_RS24365 WP_147963424.1 5540430..5541728(+) (clpX) [Streptomyces sp. NBC_01212]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGSNRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELEFEREALEAIADQAILRQTGARGLRAIMEEVLQSVMYDVPSRKDVARVVIT
PDVVRNNVNPTLVPREPRTIGKNDGGRHEKSA

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=662695 OG722_RS24365 WP_147963424.1 5540430..5541728(+) (clpX) [Streptomyces sp. NBC_01212]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTCGCCGAGACCT
CCGAGGTGCGGTGGGAGGAGCTCCCCAAGCCGCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTCGCTGTGTACAACCACTACAAGCGGGTCCAGGCCGGCGAGAACGGCGGCGGTTCGAATCG
CGACGACGCCATCGAGCTCGCCAAGTCGAACATCCTGCTGCTGGGCCCCACGGGCTCCGGCAAGACACTCCTCGCACAGA
CGCTGGCCCGCATGCTCAACGTCCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGTGACGTCTCCGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTGGAGGGGACCACCGCCTCCGTACCGCCGCAGGGTGGACGGAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTCGGCGGCGCCTTCTCGGGCCTGGAGAAGATCATCGAGTCGCGGGCCGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGCTCCAAGCTGGAGATCCAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTGCCCGTGCTGACCTCGGTCCACAACCTGGACCGC
GAGGCACTGCTCCAGATCCTGATCGAGCCGCGCAACGCGCTGGTGAAGCAGTACCAGCGCCTGTTCGAACTCGACGGCGT
GGAGCTGGAATTCGAGCGGGAGGCCCTCGAAGCCATCGCCGACCAGGCGATCCTCCGCCAGACGGGCGCGCGCGGCCTGC
GCGCCATCATGGAAGAGGTCCTCCAGTCCGTGATGTACGACGTGCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACC
CCGGACGTCGTCCGCAACAACGTCAACCCGACGCTGGTCCCGCGCGAGCCGCGCACGATCGGCAAGAACGACGGCGGCCG
CCACGAGAAGTCCGCGTAG

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(115-311)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-395)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

64.179

93.056

0.597
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.155

95.37

0.507