Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MNY58_RS08360 Genome accession   NZ_CP093217
Coordinates   1733457..1734332 (-) Length   291 a.a.
NCBI ID   WP_099089406.1    Uniprot ID   A0A2C6WRH7
Organism   Staphylococcus edaphicus strain CCM 8731     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1728457..1739332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY58_RS08345 (MNY58_08345) xerC 1728713..1729603 (-) 891 WP_099089409.1 tyrosine recombinase XerC -
  MNY58_RS08350 (MNY58_08350) trmFO 1729723..1731030 (-) 1308 WP_099089408.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MNY58_RS08355 (MNY58_08355) topA 1731187..1733253 (-) 2067 WP_099089407.1 type I DNA topoisomerase -
  MNY58_RS08360 (MNY58_08360) dprA 1733457..1734332 (-) 876 WP_099089406.1 DNA-processing protein DprA Machinery gene
  MNY58_RS08365 (MNY58_08365) sucD 1734650..1735555 (-) 906 WP_099089405.1 succinate--CoA ligase subunit alpha -
  MNY58_RS08370 (MNY58_08370) sucC 1735577..1736743 (-) 1167 WP_099089404.1 ADP-forming succinate--CoA ligase subunit beta -
  MNY58_RS08375 (MNY58_08375) - 1736851..1737621 (-) 771 WP_099089403.1 ribonuclease HII -
  MNY58_RS08380 (MNY58_08380) ylqF 1737628..1738488 (-) 861 WP_099089402.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33561.84 Da        Isoelectric Point: 9.9213

>NTDB_id=662621 MNY58_RS08360 WP_099089406.1 1733457..1734332(-) (dprA) [Staphylococcus edaphicus strain CCM 8731]
MNDLDLLKLRFAGLSTQQIHHLFKFYPSFMSYSNLERRYVLKQFLSTRKLTKRTDILRTYMSTDTNMFVEQLKNWEVQFI
TINHPLYPPLLREIHDPPLILFYRGKLTLMQSSHTLAIIGSRQATNYTLKTLQTFFLRFKKGNLTIVSGLAKGADSIAHE
QALLFNMPTIAVLGFGHMHHYPKETNEIRRQLEHKGLVISEYLPFEKPKKHYFPERNRLISGLSKGVFITESTENSGTSI
TTNCALEQNREVYVLPGSIYNKMTLGNLQSAQEGAKIVLRAEDILEDFITG

Nucleotide


Download         Length: 876 bp        

>NTDB_id=662621 MNY58_RS08360 WP_099089406.1 1733457..1734332(-) (dprA) [Staphylococcus edaphicus strain CCM 8731]
ATGAATGATCTTGACCTATTAAAATTACGATTTGCTGGATTGTCAACGCAACAAATACATCACCTTTTTAAATTTTATCC
GTCATTTATGTCATATAGTAATTTGGAAAGACGATATGTGCTTAAACAATTTTTAAGTACACGTAAATTAACTAAAAGAA
CGGACATACTTCGAACTTATATGTCGACTGATACTAACATGTTTGTTGAACAATTAAAAAATTGGGAAGTCCAATTTATA
ACTATCAATCACCCCCTATATCCGCCGTTATTGCGTGAAATTCATGATCCTCCGCTCATCCTTTTTTACCGTGGAAAGCT
TACTTTAATGCAATCTTCACATACACTTGCTATTATTGGTTCAAGACAAGCAACGAATTACACTTTGAAAACATTACAAA
CATTCTTCCTACGCTTTAAAAAAGGAAATCTAACGATTGTATCCGGCTTAGCAAAAGGTGCAGATTCAATCGCGCACGAG
CAAGCGTTGTTATTTAATATGCCAACAATTGCAGTACTAGGATTTGGTCATATGCATCATTATCCGAAAGAGACAAATGA
AATAAGAAGGCAACTTGAGCACAAGGGGTTAGTGATAAGTGAATACCTACCTTTCGAAAAGCCAAAAAAGCATTATTTTC
CGGAAAGAAATCGATTAATAAGTGGTCTTTCTAAAGGTGTATTTATAACAGAATCTACTGAGAACAGTGGAACAAGTATT
ACGACAAATTGTGCATTAGAACAAAATAGAGAAGTCTACGTTTTACCTGGTTCAATATATAATAAAATGACACTAGGGAA
TTTACAGAGTGCGCAAGAAGGGGCGAAAATAGTGTTGCGTGCAGAAGATATATTAGAGGATTTTATTACAGGATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C6WRH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

48.797

100

0.488
  dprA Staphylococcus aureus N315

48.797

100

0.488