Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | MNU50_RS04100 | Genome accession | NZ_CP093210 |
| Coordinates | 882574..883446 (+) | Length | 290 a.a. |
| NCBI ID | WP_001829468.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain TSM-50 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 850421..892627 | 882574..883446 | within | 0 |
Gene organization within MGE regions
Location: 850421..892627
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MNU50_RS03960 (MNU50_03945) | rsgA | 851060..851935 (+) | 876 | WP_002469378.1 | ribosome small subunit-dependent GTPase A | - |
| MNU50_RS03965 (MNU50_03950) | rpe | 851936..852580 (+) | 645 | WP_002469381.1 | ribulose-phosphate 3-epimerase | - |
| MNU50_RS03970 (MNU50_03955) | - | 852585..853220 (+) | 636 | WP_001830164.1 | thiamine diphosphokinase | - |
| MNU50_RS03975 (MNU50_03960) | rpmB | 853303..853491 (-) | 189 | WP_001830107.1 | 50S ribosomal protein L28 | - |
| MNU50_RS03980 (MNU50_03965) | - | 853849..854223 (+) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
| MNU50_RS03985 (MNU50_03970) | fakA | 854238..855896 (+) | 1659 | WP_002456580.1 | fatty acid kinase catalytic subunit FakA | - |
| MNU50_RS03990 (MNU50_03975) | recG | 856100..858148 (+) | 2049 | WP_002456579.1 | ATP-dependent DNA helicase RecG | - |
| MNU50_RS03995 (MNU50_03980) | fapR | 858307..858867 (+) | 561 | WP_001830099.1 | transcription factor FapR | - |
| MNU50_RS04000 (MNU50_03985) | plsX | 858869..859846 (+) | 978 | WP_002469384.1 | phosphate acyltransferase PlsX | - |
| MNU50_RS04005 (MNU50_03990) | fabD | 859848..860774 (+) | 927 | WP_002469385.1 | ACP S-malonyltransferase | - |
| MNU50_RS04010 (MNU50_03995) | fabG | 860767..861501 (+) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| MNU50_RS04015 (MNU50_04000) | - | 861729..861962 (+) | 234 | WP_001830184.1 | acyl carrier protein | - |
| MNU50_RS04020 (MNU50_04005) | rnc | 862077..862814 (+) | 738 | WP_002456575.1 | ribonuclease III | - |
| MNU50_RS04025 (MNU50_04010) | smc | 862941..866510 (+) | 3570 | WP_002456574.1 | chromosome segregation protein SMC | - |
| MNU50_RS04030 (MNU50_04015) | ftsY | 866507..867733 (+) | 1227 | WP_002456573.1 | signal recognition particle-docking protein FtsY | - |
| MNU50_RS04035 (MNU50_04020) | - | 867735..868067 (+) | 333 | WP_002457379.1 | putative DNA-binding protein | - |
| MNU50_RS04040 (MNU50_04025) | ffh | 868098..869465 (+) | 1368 | WP_001830113.1 | signal recognition particle protein | - |
| MNU50_RS04045 (MNU50_04030) | rpsP | 869773..870048 (+) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| MNU50_RS04050 (MNU50_04035) | rimM | 870175..870678 (+) | 504 | WP_001832559.1 | ribosome maturation factor RimM | - |
| MNU50_RS04055 (MNU50_04040) | trmD | 870678..871415 (+) | 738 | WP_001829466.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| MNU50_RS04060 (MNU50_04045) | rplS | 871521..871871 (+) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| MNU50_RS04065 (MNU50_04050) | - | 872401..875004 (-) | 2604 | WP_002456572.1 | YfhO family protein | - |
| MNU50_RS04070 (MNU50_04055) | - | 874997..877597 (-) | 2601 | WP_002456571.1 | YfhO family protein | - |
| MNU50_RS04075 (MNU50_04060) | ylqF | 877926..878789 (+) | 864 | WP_001829495.1 | ribosome biogenesis GTPase YlqF | - |
| MNU50_RS04080 (MNU50_04065) | - | 878794..879564 (+) | 771 | WP_001829514.1 | ribonuclease HII | - |
| MNU50_RS04085 (MNU50_04070) | sucC | 879672..880838 (+) | 1167 | WP_002456569.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| MNU50_RS04090 (MNU50_04075) | sucD | 880860..881768 (+) | 909 | WP_002446283.1 | succinate--CoA ligase subunit alpha | - |
| MNU50_RS04095 (MNU50_04080) | - | 882018..882233 (+) | 216 | Protein_810 | IS200/IS605 family transposase | - |
| MNU50_RS04100 (MNU50_04085) | dprA | 882574..883446 (+) | 873 | WP_001829468.1 | DNA-processing protein DprA | Machinery gene |
| MNU50_RS04105 (MNU50_04090) | topA | 883629..885698 (+) | 2070 | WP_001829508.1 | type I DNA topoisomerase | - |
| MNU50_RS04110 (MNU50_04095) | trmFO | 885723..887030 (+) | 1308 | WP_001832560.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| MNU50_RS04115 (MNU50_04100) | xerC | 887255..888145 (+) | 891 | WP_002456225.1 | tyrosine recombinase XerC | - |
| MNU50_RS04120 (MNU50_04105) | hslV | 888149..888691 (+) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| MNU50_RS04125 (MNU50_04110) | hslU | 888760..890163 (+) | 1404 | WP_002469380.1 | ATP-dependent protease ATPase subunit HslU | - |
| MNU50_RS04130 (MNU50_04115) | codY | 890187..890960 (+) | 774 | WP_002446289.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| MNU50_RS04135 (MNU50_04120) | rpsB | 891319..892107 (+) | 789 | WP_001832557.1 | 30S ribosomal protein S2 | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33726.62 Da Isoelectric Point: 9.3618
>NTDB_id=662530 MNU50_RS04100 WP_001829468.1 882574..883446(+) (dprA) [Staphylococcus epidermidis strain TSM-50]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
Nucleotide
Download Length: 873 bp
>NTDB_id=662530 MNU50_RS04100 WP_001829468.1 882574..883446(+) (dprA) [Staphylococcus epidermidis strain TSM-50]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCGCAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCGCAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus N315 |
56.944 |
99.31 |
0.566 |
| dprA | Staphylococcus aureus MW2 |
56.944 |
99.31 |
0.566 |