Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG233_RS13420 Genome accession   NZ_CP108536
Coordinates   3167461..3168873 (+) Length   470 a.a.
NCBI ID   WP_275492804.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01218     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3162461..3173873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG233_RS13405 (OG233_13410) - 3162992..3163840 (+) 849 WP_275492801.1 hypothetical protein -
  OG233_RS13410 (OG233_13415) - 3164016..3166172 (-) 2157 WP_327268720.1 hypothetical protein -
  OG233_RS13415 (OG233_13420) - 3166490..3167353 (-) 864 WP_327268721.1 class I SAM-dependent methyltransferase -
  OG233_RS13420 (OG233_13425) radA/sms 3167461..3168873 (+) 1413 WP_275492804.1 DNA repair protein RadA Machinery gene
  OG233_RS13425 (OG233_13430) disA 3168954..3170078 (+) 1125 WP_275492805.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG233_RS13430 (OG233_13435) - 3170209..3171054 (-) 846 WP_327268722.1 hypothetical protein -
  OG233_RS13435 (OG233_13440) - 3171297..3172202 (+) 906 WP_275492807.1 A/G-specific adenine glycosylase -
  OG233_RS13440 (OG233_13445) - 3172327..3173031 (-) 705 WP_275492808.1 M23 family metallopeptidase -
  OG233_RS13445 (OG233_13450) - 3173508..3173867 (+) 360 WP_327268723.1 trypco2 family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49477.66 Da        Isoelectric Point: 8.7267

>NTDB_id=662461 OG233_RS13420 WP_275492804.1 3167461..3168873(+) (radA/sms) [Streptomyces sp. NBC_01218]
MAARTKTAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAAVPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAANAEHRTLYVTAEESASQVRMRADRIKAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPRDPGKVPAGMKVTEVADMGDALRVLPRRSRSEAPREDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=662461 OG233_RS13420 WP_275492804.1 3167461..3168873(+) (radA/sms) [Streptomyces sp. NBC_01218]
ATGGCTGCCCGTACGAAGACCGCGAAGGACCGGCCGTCCTACCGTTGCACCGAGTGCGGGTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACCGTCGAGGAGTTCGGCGGCGCGCCCGCCGTGCGCACCACCGCGGCCG
GCCGCGTCTCCACCGCGGCCGTGCCCATCGGTCAGGTGGACAGCCGGCAGGCGACCGCACGCTCGACCGGTGTCGGTGAG
CTGGACCGGGTCCTCGGCGGCGGGCTCGTCCCGGGCGCCGTGGTGCTGCTGGCCGGGGAGCCGGGGGTCGGGAAGTCGAC
CCTGCTGCTCGACGTGGCCGCGAAGGCCGCGAACGCGGAACACCGCACCCTCTACGTCACGGCGGAGGAGTCCGCGAGCC
AGGTCCGGATGCGCGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCGGCCGAGACCGACCTCTCGGCCGTC
CTCGGCCACCTCGACGCGGTCAAGCCCTCCCTGCTGGTGCTGGACTCGGTGCAGACGGTCGCGTCCCCGGAGATCGACGG
CGCGCCGGGCGGCATGGCGCAGGTCCGTGAGGTCGCCGGCGCGCTCATCCGCGCCTCCAAGGACCGCGGGATGGCGACGC
TGCTGGTGGGCCACGTCACCAAGGACGGCGCCATCGCCGGGCCCCGGCTGCTGGAGCACCTCGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCGTCAAGAACCGTTACGGCGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGGATCACCGGTCTCGCCGATCCGTCCGGCCTCTTCCTGACCCGGCGCGACGAGCCGGTGC
CCGGCACCTGTCTGACCGTCACCCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTCACGGTCGACTCGCAG
ATCCCGTCGCCCCGCCGCACCACCTCCGGTCTGGAGACCTCGCGGGTCTCCATGATGCTGGCGGTGCTGGAGCAGCGGGG
CCGGATCAGCGCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGGGTGAAGCTCACCGAGCCCGCCGCGGACC
TGGCCATCGCGCTCGCGCTGGCGAGTGCGGCGAGCGACACCCCGCTCCCGAAGAACCTGGTCGCCATCGGTGAGGTGGGT
CTCGCCGGGGAGGTGCGGCGGGTCACCGGCGTGCAGCGCAGACTGGCCGAAGCGCACCGTCTGGGGTTCACGCACGCCTT
GGTTCCGCGCGATCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGCGATGCTCTCAGGGTGC
TGCCGCGCCGGTCTCGTTCGGAGGCACCACGGGAGGACGGCGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.383

0.421
  radA Streptococcus pneumoniae Rx1

42.163

96.383

0.406
  radA Streptococcus pneumoniae D39

42.163

96.383

0.406
  radA Streptococcus pneumoniae R6

42.163

96.383

0.406
  radA Streptococcus pneumoniae TIGR4

42.163

96.383

0.406
  radA Streptococcus mitis SK321

43.59

91.277

0.398
  radA Streptococcus mitis NCTC 12261

43.59

91.277

0.398