Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG345_RS35475 Genome accession   NZ_CP108531
Coordinates   7977723..7978358 (-) Length   211 a.a.
NCBI ID   WP_371604302.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01220     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7972723..7983358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG345_RS35440 (OG345_35410) - 7973010..7973216 (-) 207 WP_219570949.1 DUF397 domain-containing protein -
  OG345_RS35445 (OG345_35415) - 7973241..7974101 (-) 861 WP_328947537.1 helix-turn-helix transcriptional regulator -
  OG345_RS35450 (OG345_35420) - 7974311..7974742 (+) 432 WP_219570947.1 ATP-binding protein -
  OG345_RS35455 (OG345_35425) - 7974765..7975682 (-) 918 WP_371604301.1 LysR family transcriptional regulator -
  OG345_RS35460 (OG345_35430) - 7975755..7976402 (+) 648 WP_219570945.1 LysE family translocator -
  OG345_RS35465 (OG345_35435) - 7976431..7976904 (-) 474 WP_328947534.1 C40 family peptidase -
  OG345_RS35470 (OG345_35440) - 7977407..7977715 (-) 309 WP_328947533.1 hypothetical protein -
  OG345_RS35475 (OG345_35445) clpP 7977723..7978358 (-) 636 WP_371604302.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG345_RS35480 (OG345_35450) - 7978457..7978741 (+) 285 WP_328947531.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  OG345_RS35485 (OG345_35455) - 7978809..7979801 (-) 993 WP_371604303.1 ABC transporter permease -
  OG345_RS35490 (OG345_35460) - 7979912..7980541 (+) 630 WP_329542543.1 helix-turn-helix domain-containing protein -
  OG345_RS35495 (OG345_35465) - 7980680..7980982 (+) 303 WP_148015252.1 urease subunit gamma -
  OG345_RS35500 (OG345_35470) - 7980996..7981307 (+) 312 WP_328951658.1 urease subunit beta -
  OG345_RS35505 (OG345_35475) - 7981300..7983021 (+) 1722 WP_328947528.1 urease subunit alpha -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22863.00 Da        Isoelectric Point: 5.5738

>NTDB_id=662431 OG345_RS35475 WP_371604302.1 7977723..7978358(-) (clpP) [Streptomyces sp. NBC_01220]
MHRPAARHLLPEFTERTSQGTRTLDPYSKLLAERVVFLGTPVDDTAATDLVAQFMYLEHDAPDRPISLYINSPGGSFGAM
TAIYDTMAFLTCEVETFCLGQAGAGAAVLLAAGAPGKRHALPGARVVVQQPELSEPVQGQPSDLEIEARELARMRDTLTG
MLARHTGRPAEQIAADTERDLILDAEGAKDYGLVDHIVRRRGPSLPVHPVR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=662431 OG345_RS35475 WP_371604302.1 7977723..7978358(-) (clpP) [Streptomyces sp. NBC_01220]
ATGCACCGCCCCGCCGCCCGCCACCTACTGCCCGAGTTCACCGAGCGCACGTCCCAGGGGACGCGCACGCTCGACCCGTA
CTCCAAACTCCTCGCCGAACGGGTCGTGTTCCTCGGCACACCCGTCGACGACACTGCGGCCACAGATCTGGTCGCCCAGT
TCATGTATCTGGAGCACGACGCTCCCGACCGGCCCATCTCGCTCTACATCAACTCCCCCGGCGGCTCGTTCGGCGCCATG
ACCGCCATCTACGACACGATGGCGTTCCTCACCTGCGAGGTGGAGACCTTCTGCCTCGGCCAGGCGGGAGCCGGCGCGGC
CGTGCTGCTCGCAGCGGGCGCACCGGGCAAACGCCACGCACTGCCGGGTGCCCGCGTGGTGGTACAGCAGCCCGAACTCT
CCGAGCCGGTACAGGGACAGCCGTCCGACCTGGAGATCGAGGCGCGGGAACTGGCCCGGATGCGCGACACGCTGACCGGC
ATGCTGGCCCGTCACACCGGCCGCCCCGCCGAGCAGATCGCCGCCGACACCGAGCGCGATCTGATCCTCGACGCCGAGGG
CGCCAAGGACTACGGGCTGGTCGACCACATCGTGCGACGACGCGGGCCGTCGCTGCCCGTGCACCCCGTGAGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(19-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

46.073

90.521

0.417
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

41.667

90.995

0.379