Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG345_RS22655 Genome accession   NZ_CP108531
Coordinates   5045886..5047298 (-) Length   470 a.a.
NCBI ID   WP_371603499.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5040886..5052298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG345_RS22635 (OG345_22585) - 5041503..5042147 (-) 645 WP_219572036.1 SigE family RNA polymerase sigma factor -
  OG345_RS22640 (OG345_22590) - 5042353..5043255 (-) 903 WP_219575455.1 A/G-specific adenine glycosylase -
  OG345_RS22645 (OG345_22595) - 5043594..5044418 (+) 825 WP_328949211.1 hypothetical protein -
  OG345_RS22650 (OG345_22600) disA 5044637..5045761 (-) 1125 WP_114245192.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG345_RS22655 (OG345_22605) radA/sms 5045886..5047298 (-) 1413 WP_371603499.1 DNA repair protein RadA Machinery gene
  OG345_RS22660 (OG345_22610) - 5047483..5049459 (+) 1977 WP_371603500.1 hypothetical protein -
  OG345_RS22665 (OG345_22615) - 5049549..5050388 (-) 840 WP_328949209.1 hypothetical protein -
  OG345_RS22670 (OG345_22620) - 5050473..5051423 (+) 951 WP_306070605.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49444.58 Da        Isoelectric Point: 8.4898

>NTDB_id=662408 OG345_RS22655 WP_371603499.1 5045886..5047298(-) (radA/sms) [Streptomyces sp. NBC_01220]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASHEHRTLYVTAEESASQVRMRADRIGAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSRAQAPQEDGVRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=662408 OG345_RS22655 WP_371603499.1 5045886..5047298(-) (radA/sms) [Streptomyces sp. NBC_01220]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTGCGCACCACGGCGGCCG
GCCGCGTCTCCACCGCCGCGCTCCCCATCGGCCAGGTAGACAGCCGCCAGGCCACCGCCCGCTCGACGGGCGTGGGTGAG
CTGGACCGTGTGCTGGGCGGCGGCCTGGTGCCCGGTGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTGGGGAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCCGCGAGCCACGAGCACCGCACTTTGTACGTCACGGCGGAGGAGTCCGCCAGCC
AGGTCAGGATGCGTGCCGACCGGATCGGGGCGATCAACGACCATCTGTACCTGGCCGCCGAGACGGATCTGTCAGCGGTC
CTCGGCCATCTGGACGCGGTCAAACCGTCCCTGCTCGTCCTGGACTCCGTGCAGACCGTCGCCTCCCCCGAGATCGAGGG
CGCGCCCGGCGGGATGGCGCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGCATGTCGACCC
TGCTGGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTGTCG
TTCGAGGGCGACCGGCATGCCAGGCTCCGGCTCGTACGCGGCGTCAAGAACCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTCCACGACGAGGGCATCACCGGCCTAGCCGACCCCTCCGGCCTCTTCCTCACCCGCCGCGACGAGCCCGTGC
CCGGCACCTGCCTGACCGTCACCCTGGAGGGCAAGCGTCCGCTGGTCGCCGAGGTTCAGGCCCTCACCGTCGACTCCCAG
ATCCCTTCGCCCCGGCGCACCACTTCGGGGCTCGAGACGTCCCGGGTATCGATGATGCTGGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCTCGCTGGGCAAACGGGACATCTACAGCGCCACGGTCGGCGGCGTGAAGCTCTCCGAACCGGCCGCGGACC
TCGCGATCGCGCTCGCCCTGGCCAGCGCGGCCAGCGACACACCCCTGCCCAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGGCGGGTCACCGGGGTCCAGCGCAGACTGGCCGAGGCGTACCGTCTGGGCTTCACGCACGCCTT
GGTCCCGACCGATCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTGGCCAACATGGGCGATGCGCTCAGGGTGC
TCCCGCGCCGCTCTCGCGCACAGGCCCCACAGGAGGACGGCGTACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

96.383

0.426
  radA Streptococcus pneumoniae Rx1

42.384

96.383

0.409
  radA Streptococcus pneumoniae D39

42.384

96.383

0.409
  radA Streptococcus pneumoniae R6

42.384

96.383

0.409
  radA Streptococcus pneumoniae TIGR4

42.384

96.383

0.409
  radA Streptococcus mitis SK321

43.823

91.277

0.4
  radA Streptococcus mitis NCTC 12261

43.823

91.277

0.4