Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | NCGM1900_RS11745 | Genome accession | NZ_AP014622 |
| Coordinates | 2447972..2448844 (+) | Length | 290 a.a. |
| NCBI ID | WP_003094651.1 | Uniprot ID | A0AAQ3LID6 |
| Organism | Pseudomonas aeruginosa strain NCGM1900 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2442972..2453844
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NCGM1900_RS11720 (NCGM1900_2359) | nadC | 2443298..2444146 (+) | 849 | WP_003094645.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| NCGM1900_RS32300 | - | 2444350..2444814 (-) | 465 | WP_031630343.1 | pilin | - |
| NCGM1900_RS11735 (NCGM1900_2361) | pilB | 2445044..2446744 (+) | 1701 | WP_003094647.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| NCGM1900_RS11740 (NCGM1900_2362) | pilC | 2446748..2447968 (+) | 1221 | WP_003094649.1 | type II secretion system F family protein | Machinery gene |
| NCGM1900_RS11745 (NCGM1900_2363) | pilD | 2447972..2448844 (+) | 873 | WP_003094651.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| NCGM1900_RS11750 (NCGM1900_2364) | coaE | 2448841..2449452 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| NCGM1900_RS11755 (NCGM1900_2365) | yacG | 2449449..2449649 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| NCGM1900_RS11760 (NCGM1900_2366) | - | 2449686..2449895 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| NCGM1900_RS11765 (NCGM1900_2367) | - | 2450001..2450690 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| NCGM1900_RS11770 (NCGM1900_2368) | - | 2450687..2451157 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| NCGM1900_RS11775 (NCGM1900_2369) | - | 2451154..2451579 (-) | 426 | WP_003094666.1 | GNAT family N-acetyltransferase | - |
| NCGM1900_RS11780 (NCGM1900_2370) | - | 2451712..2452341 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| NCGM1900_RS11785 (NCGM1900_2371) | - | 2452338..2452787 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| NCGM1900_RS11790 (NCGM1900_2372) | - | 2452813..2452983 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31852.89 Da Isoelectric Point: 7.7068
>NTDB_id=66235 NCGM1900_RS11745 WP_003094651.1 2447972..2448844(+) (pilD) [Pseudomonas aeruginosa strain NCGM1900]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQANYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQANYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=66235 NCGM1900_RS11745 WP_003094651.1 2447972..2448844(+) (pilD) [Pseudomonas aeruginosa strain NCGM1900]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGAACTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGAACTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.516 |
96.897 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
52.65 |
97.586 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |