Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG609_RS22900 Genome accession   NZ_CP108529
Coordinates   5120013..5121425 (-) Length   470 a.a.
NCBI ID   WP_327274524.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5115013..5126425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG609_RS22875 (OG609_22925) - 5115216..5115866 (-) 651 WP_327274519.1 SigE family RNA polymerase sigma factor -
  OG609_RS22880 (OG609_22930) - 5116041..5116943 (-) 903 WP_327274520.1 A/G-specific adenine glycosylase -
  OG609_RS22885 (OG609_22935) - 5117088..5117732 (-) 645 WP_327274521.1 phosphatase PAP2 family protein -
  OG609_RS22890 (OG609_22940) - 5117906..5118721 (+) 816 WP_327274522.1 hypothetical protein -
  OG609_RS22895 (OG609_22945) disA 5118808..5119932 (-) 1125 WP_327274523.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG609_RS22900 (OG609_22950) radA/sms 5120013..5121425 (-) 1413 WP_327274524.1 DNA repair protein RadA Machinery gene
  OG609_RS22905 (OG609_22955) - 5121612..5123555 (+) 1944 WP_327274525.1 hypothetical protein -
  OG609_RS22910 (OG609_22960) - 5123670..5124521 (-) 852 WP_327274526.1 hypothetical protein -
  OG609_RS22915 (OG609_22965) - 5124562..5125518 (+) 957 WP_327274527.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49548.63 Da        Isoelectric Point: 8.4875

>NTDB_id=662329 OG609_RS22900 WP_327274524.1 5120013..5121425(-) (radA/sms) [Streptomyces sp. NBC_01224]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVSE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSRAQAPQEENARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=662329 OG609_RS22900 WP_327274524.1 5120013..5121425(-) (radA/sms) [Streptomyces sp. NBC_01224]
ATGGCTGCCCGTACAAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCATGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGGACCACTGCGGCCG
GCCGGGTCAGCACCGCCGCGCTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGTCGACCGGCGTCAGCGAG
CTGGACCGAGTGCTCGGCGGCGGTCTCGTGCCGGGTGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGGAAGTCGAC
GCTGCTGCTGGACGTGGCCGCGAAGGCGGCGAGCGACGACCACCGCACGCTCTATGTCACCGCCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGCGCCGACCGGATCCGGGCGATCAACGACCACCTGTATCTCGCCGCGGAGACCGACCTGTCCGCGGTC
CTCGGCCATCTGGACGCCGTCAAGCCGTCGCTTCTCATCCTCGACTCCGTACAGACGGTCGCCTCGCCCGAGATCGACGG
GGCGCCCGGCGGCATGGCACAGGTCCGGGAGGTCGCCGGTGCCCTCATCCGGGCCTCTAAGGAACGCGGTATGTCCACGC
TGCTGGTCGGCCATGTCACCAAGGACGGGGCGATCGCCGGGCCACGGCTGCTGGAGCATCTCGTCGATGTGGTGCTGTCC
TTCGAGGGCGACCGCCATGCCCGCCTGAGGCTCGTACGGGGCGTCAAGAACAGGTACGGCGCGACCGACGAGGTCGGCTG
CTTCGAACTGCACGACGAGGGCATCACCGGCCTCGCCGACCCGTCCGGGCTGTTCCTCACCCGCCGCGACGAACCTGTGC
CCGGCACCTGCCTGACCGTCACCCTGGAGGGCAAGCGGCCGCTCGTCGCCGAGGTGCAGGCACTGACGGTCGATTCCCAG
ATCCCTTCGCCCCGGCGCACCACCTCGGGTCTGGAGACGTCCCGGGTATCGATGATGCTGGCCGTTCTGGAGCAGCGCGG
CCGGATCAGCTCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCCGCCGCGGACC
TCGCGGTCGCGCTGGCGCTGGCCAGTGCCGCGAGTGACACACCACTCCCCAAGAACCTGGTGGCGATCGGCGAAGTAGGT
CTCGCGGGCGAGGTCAGAAGGGTTACGGGAGTCCAGCGCAGGCTGGCCGAGGCATACCGTCTGGGCTTCACGCACGCGCT
GGTTCCGACCGACCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTCGCCAACATGGGTGATGCGCTGAGGGTGC
TCCCGCGCCGGTCTCGCGCACAGGCCCCGCAGGAGGAGAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.383

0.419
  radA Streptococcus pneumoniae Rx1

42.826

96.383

0.413
  radA Streptococcus pneumoniae D39

42.826

96.383

0.413
  radA Streptococcus pneumoniae R6

42.826

96.383

0.413
  radA Streptococcus pneumoniae TIGR4

42.826

96.383

0.413
  radA Streptococcus mitis SK321

44.289

91.277

0.404
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404