Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OG609_RS10350 Genome accession   NZ_CP108529
Coordinates   2454851..2455978 (-) Length   375 a.a.
NCBI ID   WP_114247024.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2449851..2460978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG609_RS10325 (OG609_10365) - 2449939..2450346 (+) 408 WP_327272545.1 rhodanese-like domain-containing protein -
  OG609_RS10330 (OG609_10370) - 2450461..2453019 (-) 2559 WP_327272546.1 FtsX-like permease family protein -
  OG609_RS10335 (OG609_10375) - 2453016..2453243 (-) 228 WP_327272547.1 hypothetical protein -
  OG609_RS10340 (OG609_10380) - 2453447..2454085 (+) 639 WP_327272548.1 hypothetical protein -
  OG609_RS10345 (OG609_10385) recX 2454119..2454847 (-) 729 WP_327272549.1 recombination regulator RecX -
  OG609_RS10350 (OG609_10390) recA 2454851..2455978 (-) 1128 WP_114247024.1 recombinase RecA Machinery gene
  OG609_RS10355 (OG609_10395) - 2456219..2456403 (+) 185 Protein_2067 short-chain dehydrogenase -
  OG609_RS10360 (OG609_10400) - 2456463..2457629 (-) 1167 WP_327277997.1 AI-2E family transporter -
  OG609_RS10365 (OG609_10405) - 2457802..2457996 (-) 195 WP_266357346.1 DUF3046 domain-containing protein -
  OG609_RS10370 (OG609_10410) - 2458076..2458990 (+) 915 WP_327272550.1 hypothetical protein -
  OG609_RS10375 (OG609_10415) - 2459684..2459833 (+) 150 WP_327272551.1 hypothetical protein -
  OG609_RS10380 (OG609_10420) - 2459910..2460215 (-) 306 WP_327272552.1 AzlD domain-containing protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 39500.96 Da        Isoelectric Point: 6.5238

>NTDB_id=662298 OG609_RS10350 WP_114247024.1 2454851..2455978(-) (recA) [Streptomyces sp. NBC_01224]
MAGTDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILEKLGVGVRPDANAAEPGADAAGGAAASADSAKSVPAPAGKAKPAKTAAAKS

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=662298 OG609_RS10350 WP_114247024.1 2454851..2455978(-) (recA) [Streptomyces sp. NBC_01224]
ATGGCAGGAACCGACCGCGAGAAGGCGCTGGACGCCGCACTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCGGTGAT
GCGCCTCGGTGAGCGGCCGAACGAGCCCATCGAGGTGATCCCCACCGGGTCGACTGCCCTCGACGTGGCCCTCGGCGTCG
GCGGCCTGCCGCGCGGCCGTGTGGTGGAGGTGTACGGACCGGAGTCCTCCGGTAAGACGACGCTGACGCTGCACGCGGTG
GCGAATGCGCAGAAGCTCGGCGGCTCGGTGGCCTTCATCGACGCGGAGCATGCCCTCGATCCCGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAGCCTCATCCTGTCCCAGCCGGACAACGGTGAGCAGGCCCTCGAAATCGTGGACATGCTGGTCC
GCTCCGGCGCCCTCGACCTGATCGTCATCGACTCCGTCGCGGCGCTCGTGCCGCGTGCGGAGATCGAGGGCGAGATGGGC
GACTCGCACGTGGGTCTGCAGGCCCGCCTGATGAGCCAGGCACTCCGTAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGTGTGATGTTCGGCTCGCCGGAGACCACGACCGGCGGCCGGG
CGCTCAAGTTCTACGCCTCGGTGCGCCTCGACATCCGCCGGATCGAGACGCTGAAGGACGGCACCGACGCCGTCGGTAAC
CGCACCCGCGTCAAGGTCGTGAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGTCTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGAAAGGCGGGCGCCTGGTACACGTACG
AGGGCGACCAACTCGGCCAGGGCAAGGAGAACGCCCGTAACTTCCTCAAGGACAACCCCGATCTCGCCAATGAGATCGAG
AAGAAGATCCTTGAGAAGCTGGGCGTCGGCGTCAGGCCTGATGCCAACGCCGCCGAGCCCGGTGCGGATGCGGCGGGCGG
CGCCGCAGCTTCGGCCGACAGCGCGAAGTCGGTGCCCGCTCCGGCCGGCAAGGCCAAGCCGGCCAAGACCGCGGCGGCCA
AGAGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

67.385

86.667

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

86.933

0.584
  recA Ralstonia pseudosolanacearum GMI1000

69.968

83.467

0.584
  recA Neisseria gonorrhoeae MS11

68.125

85.333

0.581
  recA Neisseria gonorrhoeae strain FA1090

68.125

85.333

0.581
  recA Acinetobacter baumannii D1279779

67.183

86.133

0.579
  recA Staphylococcus aureus strain ATCC 12600

66.564

86.933

0.579
  recA Acinetobacter baylyi ADP1

66.873

86.133

0.576
  recA Acinetobacter nosocomialis M2

66.873

86.133

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.563

86.133

0.573
  recA Vibrio cholerae strain A1552

66.563

86.133

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

63.393

89.6

0.568
  recA Streptococcus mutans UA159

62.84

88.267

0.555
  recA Streptococcus pyogenes NZ131

63.03

88

0.555
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

86.933

0.552
  recA Streptococcus thermophilus LMD-9

62.236

88.267

0.549
  recA Streptococcus thermophilus LMG 18311

62.236

88.267

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

87.733

0.549
  recA Streptococcus mitis NCTC 12261

61.934

88.267

0.547
  recA Streptococcus mitis SK321

61.934

88.267

0.547
  recA Glaesserella parasuis strain SC1401

63.354

85.867

0.544
  recA Helicobacter pylori 26695

62.769

86.667

0.544
  recA Lactococcus lactis subsp. cremoris KW2

62.769

86.667

0.544
  recA Helicobacter pylori strain NCTC11637

62.769

86.667

0.544
  recA Streptococcus pneumoniae TIGR4

61.631

88.267

0.544
  recA Streptococcus pneumoniae R36A

61.631

88.267

0.544
  recA Streptococcus pneumoniae Rx1

61.631

88.267

0.544
  recA Streptococcus pneumoniae D39

61.631

88.267

0.544
  recA Streptococcus pneumoniae R6

61.631

88.267

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.104

87.2

0.507