Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   MNU45_RS00320 Genome accession   NZ_CP093188
Coordinates   75980..77347 (-) Length   455 a.a.
NCBI ID   WP_254106718.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain TMDU-302     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 70980..82347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNU45_RS00295 (MNU45_00295) gtfB 71070..72389 (+) 1320 WP_001551922.1 accessory Sec system glycosylation chaperone GtfB -
  MNU45_RS00300 (MNU45_00300) - 72570..73073 (-) 504 WP_124743118.1 DUF1643 domain-containing protein -
  MNU45_RS00305 (MNU45_00305) - 73088..73399 (-) 312 WP_058649883.1 DUF960 domain-containing protein -
  MNU45_RS00310 (MNU45_00310) - 73486..73836 (-) 351 WP_058649884.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MNU45_RS00315 (MNU45_00315) ccrB 74358..75983 (-) 1626 WP_058649885.1 recombinase family protein Machinery gene
  MNU45_RS00320 (MNU45_00320) ccrA 75980..77347 (-) 1368 WP_254106718.1 recombinase family protein Machinery gene
  MNU45_RS12225 - 77776..77904 (+) 129 WP_257211085.1 hypothetical protein -
  MNU45_RS00325 (MNU45_00325) - 77998..79818 (+) 1821 WP_058649887.1 AAA family ATPase -
  MNU45_RS00330 (MNU45_00330) - 80111..80299 (-) 189 Protein_65 hypothetical protein -
  MNU45_RS00335 (MNU45_00335) - 80508..80678 (-) 171 WP_001141152.1 hypothetical protein -
  MNU45_RS00340 (MNU45_00340) - 81080..82045 (+) 966 WP_000027972.1 HNH endonuclease -
  MNU45_RS00345 (MNU45_00345) - 82142..82333 (+) 192 WP_000291518.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 53501.44 Da        Isoelectric Point: 9.8406

>NTDB_id=662273 MNU45_RS00320 WP_254106718.1 75980..77347(-) (ccrA) [Staphylococcus epidermidis strain TMDU-302]
MVEAIGYVRQSTLKQQSLATQKSLIMETAKQYGWHNIEFYDDKKTGRHTKRSGYQRMVEAITSRKCKVLCCYRLNRLHRN
LKNAIQFFEICKKHHVTIISVNDGYFDLSKEFDCFRLNILMSLAEMESNNISEQVQNGIREKAKQGKLITTHAPFGYRYR
KGRFIVHKEEAYTVKIVYRWYLQGLGYKKISQKLDKDMNFISRKPYQVRNILMNPNYCGRVINKYGTFNDIVSPIIDVDT
FEEAQERRIHKQHNRSNSRNKLKRRIKCPYCQSTLTNLTIKKRNHSLRYYVCPKNMNDAYYTCSFKGMNAQTIETEILDT
CKSYFKEQAHHSHLNERIIETLERQKMKHKQTQITQEELIEKLAQNHIDVETFKQLSTSNESETHCSSPTYLSNQMTKTI
SHISKGKLTLEDIAPLIGDITITQTKQLQGIYLKHSPINIVEQSHLIPCERNENL

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=662273 MNU45_RS00320 WP_254106718.1 75980..77347(-) (ccrA) [Staphylococcus epidermidis strain TMDU-302]
ATGGTAGAAGCCATTGGTTACGTACGTCAAAGTACATTAAAACAACAAAGTTTAGCTACTCAAAAGTCACTTATTATGGA
AACTGCAAAGCAATATGGTTGGCACAATATAGAATTTTATGACGATAAGAAAACAGGTCGACATACAAAACGTTCGGGTT
ATCAAAGGATGGTAGAAGCGATTACGTCCAGAAAATGTAAAGTATTGTGTTGCTATCGCTTGAATCGACTTCATCGTAAT
TTGAAAAACGCTATACAATTCTTTGAAATTTGTAAAAAGCATCACGTCACAATCATCAGTGTAAACGATGGCTATTTTGA
TTTGTCTAAAGAATTTGATTGTTTTCGCTTGAACATACTCATGAGTCTAGCAGAAATGGAATCAAACAATATTAGTGAAC
AAGTACAAAATGGTATAAGAGAAAAAGCCAAACAAGGTAAGTTGATTACAACACATGCCCCTTTTGGCTATCGTTATAGA
AAAGGCCGCTTTATTGTACACAAAGAAGAAGCGTATACAGTTAAAATAGTTTATCGTTGGTATTTACAAGGCCTAGGTTA
TAAGAAAATTTCTCAAAAGCTGGATAAAGATATGAATTTTATTTCTCGTAAGCCCTACCAAGTTAGAAACATTCTCATGA
ATCCTAACTATTGTGGTCGTGTTATCAATAAGTATGGCACATTTAATGATATCGTTTCGCCTATTATTGATGTTGATACA
TTTGAAGAAGCACAAGAGCGTCGTATTCATAAACAACACAATCGATCCAATTCTAGAAATAAGCTAAAACGACGAATCAA
ATGTCCTTACTGTCAATCAACATTAACTAACTTGACGATTAAAAAAAGGAATCATTCACTACGTTACTACGTTTGTCCTA
AGAATATGAATGATGCTTATTACACTTGTTCGTTTAAAGGTATGAATGCACAAACAATTGAAACAGAAATTCTCGATACT
TGTAAATCATATTTTAAAGAACAAGCACATCACAGTCATCTAAATGAGAGAATAATTGAAACACTAGAACGTCAAAAAAT
GAAACACAAACAAACACAGATAACACAAGAAGAGCTTATCGAAAAACTAGCTCAAAATCATATTGATGTAGAAACATTTA
AACAACTATCTACTAGTAATGAGAGCGAAACACATTGCTCTTCCCCCACTTATTTATCTAATCAAATGACTAAGACAATC
AGTCATATATCTAAAGGTAAATTGACATTAGAAGATATAGCCCCTTTGATTGGTGACATTACAATAACTCAAACCAAACA
ATTACAAGGAATCTACTTGAAACATAGTCCAATCAATATCGTTGAACAATCTCACTTAATACCTTGTGAAAGGAATGAAA
ACTTATGA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(168-248)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

53.587

98.022

0.525
  ccrA Staphylococcus aureus N315

50.45

97.582

0.492