Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   MNU45_RS00315 Genome accession   NZ_CP093188
Coordinates   74358..75983 (-) Length   541 a.a.
NCBI ID   WP_058649885.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain TMDU-302     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 69358..80983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNU45_RS00290 (MNU45_00290) gtfA 69569..71077 (+) 1509 WP_001551920.1 accessory Sec system glycosyltransferase GtfA -
  MNU45_RS00295 (MNU45_00295) gtfB 71070..72389 (+) 1320 WP_001551922.1 accessory Sec system glycosylation chaperone GtfB -
  MNU45_RS00300 (MNU45_00300) - 72570..73073 (-) 504 WP_124743118.1 DUF1643 domain-containing protein -
  MNU45_RS00305 (MNU45_00305) - 73088..73399 (-) 312 WP_058649883.1 DUF960 domain-containing protein -
  MNU45_RS00310 (MNU45_00310) - 73486..73836 (-) 351 WP_058649884.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MNU45_RS00315 (MNU45_00315) ccrB 74358..75983 (-) 1626 WP_058649885.1 recombinase family protein Machinery gene
  MNU45_RS00320 (MNU45_00320) ccrA 75980..77347 (-) 1368 WP_254106718.1 recombinase family protein Machinery gene
  MNU45_RS12225 - 77776..77904 (+) 129 WP_257211085.1 hypothetical protein -
  MNU45_RS00325 (MNU45_00325) - 77998..79818 (+) 1821 WP_058649887.1 AAA family ATPase -
  MNU45_RS00330 (MNU45_00330) - 80111..80299 (-) 189 Protein_65 hypothetical protein -
  MNU45_RS00335 (MNU45_00335) - 80508..80678 (-) 171 WP_001141152.1 hypothetical protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62448.77 Da        Isoelectric Point: 9.8575

>NTDB_id=662272 MNU45_RS00315 WP_058649885.1 74358..75983(-) (ccrB) [Staphylococcus epidermidis strain TMDU-302]
MKDLKKKRIGLYARVSTEMQTDGYSIQGQLNQLKEYCQFQGYKVIDEYTDRGISGKTTQRPALQRMLKDAKENKLDCIMV
YKTNRLARNTSDLLSIVEKLYKLNVEFFSLTEKIEIATSTGKLMLQILASFSEFERNTIVENVYNGQRQRAIEGYYQGNL
PLGYDKIPDSKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYIISNLFYIGKIQFAKY
RYWSDKRRKGLNEEPIIADGKHAPIIDKQLWDKVQFKRQESRKKPQVHGKGTNLLTGIVKCPKCGAAMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADILEKYVINQILEVIKSKNALKQLIEKVNEQNQIDKPSLNHDIAYKQSHYED
VKSKMNTLTKTIQDNPELDSILKPTILSYQDELNQINNQIHQLEQDKQAEAPHYDADAIAKVLQVIFKDIDKLEKSQLKS
LYLTIIDRIDIQKDEHPKKQFYVTLKLNNDIIKQLFDNHTLDEVPFSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=662272 MNU45_RS00315 WP_058649885.1 74358..75983(-) (ccrB) [Staphylococcus epidermidis strain TMDU-302]
ATGAAAGATTTAAAGAAAAAACGTATTGGATTATATGCACGTGTATCGACTGAAATGCAGACCGATGGCTATAGTATTCA
AGGTCAGTTAAATCAACTCAAAGAGTATTGTCAATTTCAAGGTTATAAAGTCATTGATGAATATACCGATCGAGGTATAT
CAGGTAAGACAACCCAACGTCCTGCATTACAACGCATGTTGAAAGATGCGAAAGAAAATAAATTAGACTGTATTATGGTC
TACAAAACCAATCGCTTAGCTAGAAATACATCAGATTTATTAAGTATAGTAGAAAAATTATATAAACTTAACGTAGAATT
TTTTAGTCTCACTGAGAAAATAGAGATTGCTACATCTACAGGTAAGTTAATGCTTCAAATTCTTGCTAGTTTCTCTGAAT
TTGAACGTAATACGATTGTAGAAAATGTTTATAACGGTCAAAGACAACGAGCGATTGAAGGATATTATCAAGGCAATTTA
CCTCTAGGCTATGACAAAATACCTGATAGTAAAAAAGAACTGATGATTAATCAACATGAAGCGAATATTGTTAAATATAT
TTTTGAGTCATACGCCAAAGGTCATGGTTATCGTAAGATTGCGAACGCATTGAATCATAAAGGGTATGTAACTAAGAAAG
GTAAACCGTTTAGTATTTCATCCATTACCTATATCATCTCAAACCTTTTTTACATTGGAAAGATACAGTTTGCGAAGTAT
AGATACTGGAGCGATAAGAGACGAAAAGGACTTAATGAGGAACCGATTATCGCAGATGGTAAACATGCGCCGATTATTGA
TAAACAATTGTGGGATAAAGTCCAATTTAAACGTCAAGAGAGTCGTAAGAAACCACAAGTTCACGGTAAAGGGACAAACC
TACTGACTGGCATTGTAAAATGTCCGAAATGTGGTGCAGCAATGGCGGCAAGTAATACGACCAATACGTTAAAAGATGGC
ACTAAGAAAAGAATCAGATATTACTCATGTAGTAATTTTAGAAATAAAGGTTCTAAAGTATGTTCGGCCAATAGCGTTAG
AGCAGATATTTTGGAGAAGTATGTTATAAATCAGATATTAGAAGTTATCAAAAGTAAAAACGCATTGAAGCAATTGATTG
AAAAGGTAAATGAACAAAACCAAATAGATAAACCCTCTTTGAATCATGATATCGCTTATAAACAATCACACTACGAAGAT
GTGAAATCGAAAATGAATACATTGACAAAAACTATCCAGGATAATCCTGAGTTAGATAGTATATTAAAACCGACAATACT
TAGCTACCAAGATGAATTGAATCAAATAAATAATCAAATCCATCAACTAGAACAAGATAAACAAGCGGAAGCTCCACATT
ATGATGCTGATGCAATTGCCAAAGTATTACAAGTAATATTCAAAGATATAGACAAATTAGAGAAATCGCAGTTAAAATCA
TTGTATCTGACGATCATCGATCGTATTGATATCCAAAAAGATGAACATCCTAAGAAGCAATTTTATGTTACGCTCAAGTT
GAATAATGATATTATCAAACAACTATTTGATAATCATACACTTGACGAAGTGCCCTTCAGCACTTCGTCTTTATTTTTGC
CCCAAACATTATATCTTACTATTTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(179-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(300-355)

Resolvase, N terminal domain (Resolvase)

(11-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

71.771

100

0.719