Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG444_RS13260 Genome accession   NZ_CP108518
Coordinates   2823699..2824736 (-) Length   345 a.a.
NCBI ID   WP_327266769.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01232     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2818699..2829736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG444_RS13240 (OG444_13230) - 2818741..2819106 (-) 366 WP_327262364.1 hypothetical protein -
  OG444_RS13245 (OG444_13235) rcrP 2819335..2821068 (+) 1734 WP_327262365.1 ABC transporter ATP-binding protein Regulator
  OG444_RS13250 (OG444_13240) rcrQ 2821065..2822987 (+) 1923 WP_327262366.1 ABC transporter ATP-binding protein Regulator
  OG444_RS13255 (OG444_13245) - 2823105..2823620 (+) 516 WP_327262367.1 GNAT family N-acetyltransferase -
  OG444_RS13260 (OG444_13250) rpoS 2823699..2824736 (-) 1038 WP_327266769.1 RNA polymerase sigma factor Regulator
  OG444_RS13265 (OG444_13255) - 2824904..2825506 (+) 603 WP_327262368.1 hypothetical protein -
  OG444_RS13270 (OG444_13260) - 2825503..2826468 (+) 966 WP_327262369.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG444_RS13275 (OG444_13265) - 2826472..2828583 (-) 2112 WP_327262370.1 molybdopterin oxidoreductase family protein -
  OG444_RS13280 (OG444_13270) - 2828651..2829085 (-) 435 WP_327262371.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38729.23 Da        Isoelectric Point: 5.2566

>NTDB_id=662136 OG444_RS13260 WP_327266769.1 2823699..2824736(-) (rpoS) [Streptomyces sp. NBC_01232]
MTVNASESSEAKAVDEEPEVLELIEPVPVQRRRSSSDSGGGAGPSADLFRQYLREIGRIPLLTAAEEVDLARRVEAGLFA
EEKLGSTPDLDSQLALDLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKF
STYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERVLEVLRLAQEPVSL
HAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERI
RQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=662136 OG444_RS13260 WP_327266769.1 2823699..2824736(-) (rpoS) [Streptomyces sp. NBC_01232]
CTGACCGTGAACGCGAGCGAGTCCTCGGAGGCCAAGGCCGTGGACGAAGAGCCCGAGGTACTGGAGCTGATCGAGCCGGT
GCCCGTGCAGCGCAGGCGCAGCAGCAGCGACAGCGGAGGCGGAGCGGGTCCGTCCGCCGACCTGTTCCGGCAGTACCTCC
GCGAGATAGGCAGGATCCCGCTGCTCACCGCCGCCGAGGAGGTGGACCTCGCGCGACGCGTCGAAGCCGGCCTGTTCGCC
GAGGAGAAGCTCGGCTCCACCCCCGACCTCGACTCCCAGCTCGCCCTCGACCTCGACAAGCTGGTCGTCATGGGGCGGAT
GGCCAAGCGCCGTCTCATCGAGTCGAACCTGCGGCTGGTCGTCTCCGTCGCGAAGCGGTACGTGGGCCGCGGGCTGACCA
TGCTCGACCTCGTGCAGGAGGGCAACCTCGGGCTGATCCGGGCGGTCGAGAAGTTCGACTACGCCCGCGGGTACAAGTTC
TCCACCTACGCCACCTGGTGGATCAGGCAGGCGATGTCCCGGGCCCTCGCCGACCAGGCACGGACGATCCGCGTGCCCGT
CCACGTCGTCGAGCTGATCAACCGCGTCGTCCGCGTGCAGCGCCGCATGCTGCAGGAGCGCGGGTACGAACCCACCGCCG
AAGAAGTGGCGGTCCACCTGGAGCTGACCCCCGAGCGGGTCCTGGAGGTGCTCCGCCTCGCCCAGGAGCCGGTCTCCCTG
CACGCCCCGGTGGGCGAGGAGGACGATGTCGCGCTCGGCGACCTCATCGAGGACGGGGACGCCGCCTCGCCCGTGGAGTC
CGCCGCGTTCTTCCTGCTGCGCGAGCACCTGGAAGCCGTCCTGTCGACCCTCGGCGAGCGCGAGCGCAAGGTCGTCCAGC
TGCGGTACGGCCTCGCCGACGGGCGGCCCCGCACCCTGGAGGAGATCGGCCGGATCTTCGGCGTGACCCGCGAGCGGATC
CGCCAGATCGAGTCCAAGACCCTCAACAAGCTGCGCGACCACGCCTTCGCCGACCAGCTCCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(191-267)

Sigma-70, region 4 (Sigma70_r4)

(280-332)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(47-80)

Sigma-70 region 2 (Sigma70_r2)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.027

84.928

0.374