Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG332_RS23690 Genome accession   NZ_CP108514
Coordinates   5002389..5002988 (+) Length   199 a.a.
NCBI ID   WP_030709293.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4997389..5007988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG332_RS23665 (OG332_23650) - 4997955..4999310 (+) 1356 WP_327415348.1 aspartate aminotransferase family protein -
  OG332_RS23670 (OG332_23655) - 4999408..5000073 (+) 666 WP_327415349.1 GntR family transcriptional regulator -
  OG332_RS23675 (OG332_23660) - 5000182..5000832 (+) 651 WP_327415350.1 hypothetical protein -
  OG332_RS23680 (OG332_23665) - 5000973..5001719 (-) 747 WP_327415351.1 SLATT domain-containing protein -
  OG332_RS23685 (OG332_23670) - 5001999..5002343 (+) 345 WP_327415352.1 YbaB/EbfC family nucleoid-associated protein -
  OG332_RS23690 (OG332_23675) recR 5002389..5002988 (+) 600 WP_030709293.1 recombination mediator RecR Machinery gene
  OG332_RS23695 (OG332_23680) - 5002981..5003628 (+) 648 WP_327415353.1 DUF5063 domain-containing protein -
  OG332_RS23700 (OG332_23685) - 5003749..5005023 (+) 1275 WP_319722162.1 aspartate kinase -
  OG332_RS23705 (OG332_23690) - 5005020..5006093 (+) 1074 WP_327415354.1 aspartate-semialdehyde dehydrogenase -
  OG332_RS23710 (OG332_23695) - 5006517..5007059 (+) 543 WP_327419354.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21912.29 Da        Isoelectric Point: 5.0142

>NTDB_id=662073 OG332_RS23690 WP_030709293.1 5002389..5002988(+) (recR) [Streptomyces sp. NBC_01233]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCNICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGEVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=662073 OG332_RS23690 WP_030709293.1 5002389..5002988(+) (recR) [Streptomyces sp. NBC_01233]
TTGTACGAAGGCGTGGTTCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGCCGCCTCGCGCACGCACTGCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGCGGTATGCGGGAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGCGATCCGCGCCGCGACCTCACGGTC
ATCTGTGTCGTGGAAGAGCCGAAGGACGTCGTCGCGATCGAGCGGACGCGCGAGTTCCGGGGCAAGTACCACGTCCTCGG
CGGAGCGATCAGCCCGATCGAGGGCGTCGGTCCGGACGACCTGCGCATCCGCGAGCTGCTGGCGCGCCTGGCGGACGGCG
AGGTGACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472