Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   OG332_RS15390 Genome accession   NZ_CP108514
Coordinates   3279159..3280445 (-) Length   428 a.a.
NCBI ID   WP_301371147.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01233     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3274159..3285445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG332_RS15370 (OG332_15365) - 3274254..3274865 (+) 612 WP_327414012.1 vitamin K epoxide reductase family protein -
  OG332_RS15375 (OG332_15370) - 3274960..3277581 (-) 2622 WP_327414013.1 valine--tRNA ligase -
  OG332_RS15380 (OG332_15375) - 3277721..3278665 (+) 945 WP_327414014.1 hypothetical protein -
  OG332_RS15385 (OG332_15380) - 3278727..3278996 (-) 270 WP_327414015.1 hypothetical protein -
  OG332_RS15390 (OG332_15385) clpX 3279159..3280445 (-) 1287 WP_301371147.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG332_RS15395 (OG332_15390) clpP 3280599..3281264 (-) 666 WP_150257432.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG332_RS15400 (OG332_15395) - 3281318..3281935 (-) 618 WP_030026957.1 ATP-dependent Clp protease proteolytic subunit -
  OG332_RS15405 (OG332_15400) tig 3282212..3283606 (-) 1395 WP_327414016.1 trigger factor -
  OG332_RS15420 (OG332_15415) - 3284237..3284782 (+) 546 WP_327414017.1 hypothetical protein -
  OG332_RS15425 (OG332_15420) - 3284824..3285018 (-) 195 WP_030008564.1 membrane protein -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 46948.84 Da        Isoelectric Point: 4.7751

>NTDB_id=662055 OG332_RS15390 WP_301371147.1 3279159..3280445(-) (clpX) [Streptomyces sp. NBC_01233]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
SDVVRSNVNPTLVPRIVPKDQGPHEKSA

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=662055 OG332_RS15390 WP_301371147.1 3279159..3280445(-) (clpX) [Streptomyces sp. NBC_01233]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAAGAAGAGCTCGCGGAGACCT
CCGAGGTCCGGTGGGAGGAACTCCCCAAGCCCCGTGAGATCTACGAGTTCCTGGAGAGCTATGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCCCTCTCGGTAGCGGTCTACAACCACTACAAGCGGGTCCAGGCCGGCGAGAACGGCGGCGCGCAGGGCCG
GGACGACGCGATCGAGCTCGCGAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCCGGCAAGACGCTGCTCGCACAGA
CCCTCGCCCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTGGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGACGTGTCGGGTGAAGGCGTCCAGCAGGCCC
TCCTGAAGATCCTGGAAGGCACGACCGCCTCCGTCCCGCCGCAGGGCGGCCGGAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCCTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGTGCGGGCGC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCCAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCCGTGCTGACCTCCGTCCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTGATCGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGGCTGTTCGAACTCGACGGTGT
CGAGCTGGACTTCGAGCGCGAGGCCCTCGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACGGGCGCGCGCGGCCTGC
GCGCCATCATGGAAGAGGTCCTCATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGCGTGGTCATCACC
TCGGACGTGGTCCGCTCCAACGTCAACCCGACGCTGGTCCCGAGGATCGTCCCGAAGGACCAGGGCCCGCACGAGAAGTC
CGCGTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-395)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(115-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

63.93

93.925

0.6
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.771

96.028

0.516