Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SRT_RS10260 Genome accession   NZ_AP014612
Coordinates   2096903..2097673 (+) Length   256 a.a.
NCBI ID   WP_161940058.1    Uniprot ID   -
Organism   Streptococcus troglodytae strain TKU 31     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2091903..2102673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRT_RS10235 - 2092753..2093706 (+) 954 WP_128832720.1 DDE-type integrase/transposase/recombinase -
  SRT_RS10245 (SRT_20790) - 2093937..2094599 (-) 663 WP_128833989.1 YoaK family protein -
  SRT_RS10250 (SRT_20800) rlmH 2094942..2095421 (-) 480 WP_128834079.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SRT_RS10255 (SRT_20810) htrA 2095659..2096834 (+) 1176 WP_128833990.1 S1C family serine protease Regulator
  SRT_RS10260 (SRT_20820) spo0J 2096903..2097673 (+) 771 WP_161940058.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29618.37 Da        Isoelectric Point: 10.2091

>NTDB_id=66198 SRT_RS10260 WP_161940058.1 2096903..2097673(+) (spo0J) [Streptococcus troglodytae strain TKU 31]
MTEQLKHLNTKDINPNPYQPRLQFKTEELEELAQSIKENGLIQPIIVRRSDIFGYDLVAGERRLKAAKLVGLSKIPVIIK
KISDDDSMKQAIIENLQRSDLNPIEEAKAYQNLINRNHMTHDDIAKVIGKSRPYITNSVRLLNLPLHISQALEKGLISQG
HARLLLSIEKQDLQDKWFQKILDEHLSVRQIEKALKNQTKKKKKPLKDIFLVEKEKELSQSLGLPVVIHYNKRHQGQLKI
SFSSEEDFNRLMNKLN

Nucleotide


Download         Length: 771 bp        

>NTDB_id=66198 SRT_RS10260 WP_161940058.1 2096903..2097673(+) (spo0J) [Streptococcus troglodytae strain TKU 31]
ATGACTGAACAATTAAAACATCTTAATACTAAAGATATTAATCCAAATCCCTATCAACCTAGACTGCAGTTTAAGACAGA
AGAACTAGAAGAACTAGCACAATCTATTAAAGAAAATGGCTTAATTCAACCCATTATCGTTCGAAGATCTGATATTTTTG
GCTACGATTTAGTTGCAGGGGAAAGGCGTTTAAAAGCAGCAAAATTAGTTGGATTAAGTAAGATTCCTGTTATTATCAAA
AAAATTTCTGATGATGACAGTATGAAACAAGCTATTATCGAAAATTTACAACGTTCTGATCTTAATCCCATTGAAGAAGC
CAAAGCTTACCAAAATCTCATTAATAGAAATCATATGACTCATGATGATATTGCTAAAGTAATTGGAAAATCAAGACCAT
ATATTACTAACAGTGTCAGATTATTAAATCTTCCTCTACACATCAGCCAAGCTCTTGAAAAGGGATTAATTTCTCAAGGA
CACGCACGACTTCTTTTAAGTATAGAAAAGCAAGATTTACAAGATAAATGGTTTCAAAAGATTCTAGATGAACATTTAAG
TGTACGTCAAATTGAAAAGGCACTTAAAAATCAAACTAAGAAGAAAAAGAAACCTTTAAAAGATATTTTTCTAGTTGAAA
AAGAAAAAGAGTTAAGTCAATCATTAGGCTTACCTGTTGTTATTCATTACAATAAAAGACATCAAGGACAACTTAAAATT
TCTTTTTCGTCCGAAGAAGACTTTAACAGATTAATGAACAAGTTAAACTAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(148-196)

ParB/Sulfiredoxin domain (ParB_N)

(8-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

93.75

100

0.938

Multiple sequence alignment