Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   SRT_RS09050 Genome accession   NZ_AP014612
Coordinates   1860980..1862032 (-) Length   350 a.a.
NCBI ID   WP_128833852.1    Uniprot ID   A0A1L7LLM5
Organism   Streptococcus troglodytae strain TKU 31     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1855980..1867032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRT_RS09035 (SRT_18500) gshAB 1856409..1858730 (+) 2322 WP_193432418.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  SRT_RS09040 (SRT_18510) - 1858809..1859411 (-) 603 WP_128833851.1 nitroreductase family protein -
  SRT_RS09045 (SRT_18520) amiF 1860061..1860987 (-) 927 WP_128834071.1 ABC transporter ATP-binding protein Regulator
  SRT_RS09050 (SRT_18530) oppD 1860980..1862032 (-) 1053 WP_128833852.1 ABC transporter ATP-binding protein Regulator
  SRT_RS09055 (SRT_18540) - 1862042..1863073 (-) 1032 WP_128833853.1 ABC transporter permease -
  SRT_RS09060 (SRT_18550) - 1863084..1863998 (-) 915 WP_128833854.1 ABC transporter permease -
  SRT_RS09065 (SRT_18560) - 1864104..1865753 (-) 1650 WP_128833855.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39242.63 Da        Isoelectric Point: 5.1352

>NTDB_id=66191 SRT_RS09050 WP_128833852.1 1860980..1862032(-) (oppD) [Streptococcus troglodytae strain TKU 31]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGRNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKNEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILIADEPTTALDVTIQAQILHLMEEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTHTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLEEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWKKWKNLQGEKHDD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=66191 SRT_RS09050 WP_128833852.1 1860980..1862032(-) (oppD) [Streptococcus troglodytae strain TKU 31]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGAGAAACGCTGGCTATTGTTGGCGAATCTGGTTCTGGGAAGTCGGTGACCACAC
GAACTTTAATGGGCCTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAAGGACGTAATCTAAATGATTTG
AAGGAAGAAGATTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCCATTATCAAACATGAAAAAGTTACTAAAAATGAGGCTCTTAAGCGGGCTC
TTGATATGATGGAAAAGGTTGGTATTCCTAATGCGCAAGAGCACATCAACGATTATCCTCATCAGTGGTCAGGCGGCATG
CGCCAACGCGCTGTTATAGCCATTGCTTTGGCGACTAATCCTGAAATTCTTATTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATTCAAGCACAAATTCTTCATTTAATGGAAGAAATTCAAAAGAATACTGACTCTTCCATTATCTTTATTACTC
ATGATTTGGGTGTCGTTGCAGGTATGGCGGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAAGTTTTTTACAACCCACAGCATCCCTATACTTGGGGGCTGCTCAATTCGATGCCTACAACTCATACGGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGGGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTGAGGAGGAGCCGCCATTTTTTAAAGTCAGTGATTCACATTATGCTGCCACTTGGCTGTTA
GATGATCGCGCTCCTAAGATTACTCCGCCGGAAAGAATTTTACAGCGTTGGAAAAAATGGAAGAATTTACAGGGAGAAAA
GCATGATGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L7LLM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

97.429

100

0.974
  amiE Streptococcus salivarius strain HSISS4

54.441

99.714

0.543
  amiE Streptococcus thermophilus LMG 18311

55.689

95.429

0.531
  amiE Streptococcus thermophilus LMD-9

55.689

95.429

0.531

Multiple sequence alignment