Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SRT_RS09045 Genome accession   NZ_AP014612
Coordinates   1860061..1860987 (-) Length   308 a.a.
NCBI ID   WP_128834071.1    Uniprot ID   -
Organism   Streptococcus troglodytae strain TKU 31     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1855061..1865987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRT_RS09035 (SRT_18500) gshAB 1856409..1858730 (+) 2322 WP_193432418.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  SRT_RS09040 (SRT_18510) - 1858809..1859411 (-) 603 WP_128833851.1 nitroreductase family protein -
  SRT_RS09045 (SRT_18520) amiF 1860061..1860987 (-) 927 WP_128834071.1 ABC transporter ATP-binding protein Regulator
  SRT_RS09050 (SRT_18530) oppD 1860980..1862032 (-) 1053 WP_128833852.1 ABC transporter ATP-binding protein Regulator
  SRT_RS09055 (SRT_18540) - 1862042..1863073 (-) 1032 WP_128833853.1 ABC transporter permease -
  SRT_RS09060 (SRT_18550) - 1863084..1863998 (-) 915 WP_128833854.1 ABC transporter permease -
  SRT_RS09065 (SRT_18560) - 1864104..1865753 (-) 1650 WP_128833855.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34935.03 Da        Isoelectric Point: 6.7867

>NTDB_id=66190 SRT_RS09045 WP_128834071.1 1860061..1860987(-) (amiF) [Streptococcus troglodytae strain TKU 31]
MTENRKKLVEVKNVSLTFNKGKANQVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDFEGETISKL
KGKSLFHFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEIGPSDE
VYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREITPEHFVLATEEEAKAYKEK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=66190 SRT_RS09045 WP_128834071.1 1860061..1860987(-) (amiF) [Streptococcus troglodytae strain TKU 31]
ATGACTGAAAATCGAAAAAAGCTAGTCGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCAATAGATAATGTCAGCTTTGATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGTTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATTTCGAAGGCGAAACGATTTCAAAACTA
AAGGGGAAATCATTATTTCATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAGCTTGAATAGTCGCAT
GAAAGTTAGGGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTCAAAAATAAGGCAGACCGTGACGCAAAAGTTC
AGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCAGGCGGTCAGCGTCAA
CGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTCTGCTTTGGATGTCTC
TATCCAAGCTCAGGTCGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGTTCATTGCTCATGATT
TATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATCGTGGAAATTGGACCATCTGATGAG
GTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAGCCCGATCCAGTTTTAGAACGCCA
ACGTATTCATAAAGTTTATGACCCAGTTGATGAGTTAGACGGGCAGGAACGGGAAATGAGAGAAATTACACCGGAACATT
TTGTCTTAGCAACAGAAGAAGAGGCAAAAGCCTATAAAGAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

55.082

99.026

0.545
  amiF Streptococcus salivarius strain HSISS4

55.082

99.026

0.545
  amiF Streptococcus thermophilus LMG 18311

54.754

99.026

0.542

Multiple sequence alignment