Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG324_RS26405 Genome accession   NZ_CP108512
Coordinates   5772788..5773387 (+) Length   199 a.a.
NCBI ID   WP_107018120.1    Uniprot ID   A0A2P8Q5R9
Organism   Streptomyces sp. NBC_01236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5767788..5778387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG324_RS26390 (OG324_26395) - 5768173..5770845 (-) 2673 WP_327430397.1 ABC transporter substrate-binding protein -
  OG324_RS26395 (OG324_26400) - 5771209..5771949 (-) 741 WP_327430398.1 SLATT domain-containing protein -
  OG324_RS26400 (OG324_26405) - 5772317..5772661 (+) 345 WP_327430399.1 YbaB/EbfC family nucleoid-associated protein -
  OG324_RS26405 (OG324_26410) recR 5772788..5773387 (+) 600 WP_107018120.1 recombination mediator RecR Machinery gene
  OG324_RS26410 (OG324_26415) - 5773380..5774039 (+) 660 WP_327430400.1 DUF5063 domain-containing protein -
  OG324_RS26415 (OG324_26420) - 5774338..5774649 (+) 312 WP_327430401.1 trypco2 family protein -
  OG324_RS26420 (OG324_26425) fxsT 5775034..5777238 (+) 2205 WP_327430402.1 FxSxx-COOH system tetratricopeptide repeat protein -
  OG324_RS26425 (OG324_26430) - 5777240..5777653 (-) 414 WP_327430403.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21782.22 Da        Isoelectric Point: 4.9908

>NTDB_id=661899 OG324_RS26405 WP_107018120.1 5772788..5773387(+) (recR) [Streptomyces sp. NBC_01236]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDPRRDLSV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=661899 OG324_RS26405 WP_107018120.1 5772788..5773387(+) (recR) [Streptomyces sp. NBC_01236]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTTCAGGCCGAGCCGACGGACGTCCGCCGTCTCGCGCAGTGCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAATGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTGTCGGTG
ATCTGCGTGGTCGAGGAACCGAAGGACGTCGTCGCGGTCGAGCGCACGCGCGAGTTCCGGGGCAAGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGTGTCGGCCCCGACGACCTGCGGATAAGGGAACTCCTCGCCCGTCTCGCCGACGGCG
CGGTCACCGAACTGATCCTCGCCACGGACCCGAACCTGGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCTGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P8Q5R9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457